Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq204 86.0 3e-15 >seq204 Length=34226 Score = 86.0 bits (94), Expect = 3e-15 Identities = 91/118 (77%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA-AAATGATAACATCGCC 59 ||||| ||| |||||| |||| || ||| ||| |||||| |||||| || ||| | Sbjct 2263 GAACCGAAACACTTTGGTTTCCCGGAAGCTGCTCGCCGAGTCTTAAATGA--ACTTCGGC 2206 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || |||||||||||| |||| |||| | ||||||||||||| |||||| Sbjct 2205 GAATCGCTGGTTGGCATAGTTTACCGTTAGAACTAGGGCGGTATCTGATCGCCTTCGA 2148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278382789660