Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq204 185 2e-44 >seq204 Length=34226 Score = 185 bits (204), Expect = 2e-44 Identities = 194/249 (78%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| |||||||||| | ||| ||||| |||| Sbjct 1901 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 1960 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG-TAATGA 189 |||||||||||||| || | |||||||||||||||||||| | | |||| | |||||| Sbjct 1961 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 2018 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || | ||| | || |||||| | ||||| || ||||||||||||||||||| Sbjct 2019 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGC 2078 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| ||| | ||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 2079 AGCAAGATGAACAATTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 2137 Query 310 AGTTAGGGG 318 |||||| || Sbjct 2138 AGTTAGAGG 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915139651712