Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq204 125 3e-26 seq78 125 3e-26 >seq204 Length=34226 Score = 125 bits (138), Expect = 3e-26 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||| Sbjct 6441 TGGTACCCGAAAGATGGTGAACTATGCTTGAGCAGAATGAAGCCAGAGGAAACTCTGGTG 6500 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | ||| |||||| || |||||||||| ||||| | ||| || ||||||||| Sbjct 6501 GAAGTTCGTAGCGGTGTTGACGTGCAAATCACTCGTCTGACTTGAGTGTAGGGGCGA 6557 Score = 122 bits (134), Expect = 4e-25 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 ||| | ||||||| |||| ||| || |||||| | || ||| ||||||| || | || Sbjct 5400 CTTTGTCGAGTCGGGTTGCTTGAGACTGCAGCCCAAAGCGGGTGGTAAATCTCACCCAAG 5459 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 ||||||||| | ||||||||||||| ||||||| | || ||||| ||||||| || Sbjct 5460 ACTAAATATTCGTACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAAC 5519 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | || | |||||||| || || |||||||| ||||| ||| || || Sbjct 5520 TCTGAAGAGAGAGTTCAACAGGACGTGAAACCGTTGACAGGCAAACG 5566 >seq78 Length=187678 Score = 125 bits (138), Expect = 3e-26 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||| Sbjct 183116 TGGTACCCGAAAGATGGTGAACTATGCTTGAGCAGAATGAAGCCAGAGGAAACTCTGGTG 183175 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | ||| |||||| || |||||||||| ||||| | ||| || ||||||||| Sbjct 183176 GAAGTTCGTAGCGGTGTTGACGTGCAAATCACTCGTCTGACTTGAGTGTAGGGGCGA 183232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079858558700