Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq204 174 3e-41 >seq204 Length=34226 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 2579 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 2638 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 2639 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGATTGAAACGTTTTCT 2697 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 2698 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 2757 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 2758 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 2794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947137541632