Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq204 376 8e-102 >seq204 Length=34226 Score = 376 bits (416), Expect = 8e-102 Identities = 403/530 (76%), Gaps = 31/530 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 1674 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 1615 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1614 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1555 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 1554 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 1495 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 1494 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 1435 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG-------------CCC 286 | || ||||||||| | | ||||||| || ||||||| ||| | | Sbjct 1434 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAAGAGTTTCGACGTTCAACAC 1375 Query 287 ----CGAAGGGCGTT-GGTTTTTTATCTAATAAA-----TACACCCCTTCCGAAGTCGGG 336 |||| | |||| ||||||| ||||||||| | || || || ||| | Sbjct 1374 AAGTCGAACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCATTGTATAGTTGAA 1315 Query 337 GTTTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA-GTAAGGTACTAT 394 |||||| || ||||||||||||||||||||||| |||||||||||| ||||| | Sbjct 1314 GTTTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGTATGTAAG-----TT 1260 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 | ||||||| | ||| | ||||||||||||||| | |||||| | | | | | | Sbjct 1259 CTAATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCTTCACTTTTAAAACAGTGTGTG 1200 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 CTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510300404224