Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq71 159 3e-34 seq68 104 2e-17 >seq71 Length=204746 Score = 159 bits (176), Expect = 3e-34 Identities = 259/368 (70%), Gaps = 10/368 (3%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| || | || || | |||||| | || || |||| ||||| |||||||| | Sbjct 134221 TGGAACGATTTTCTCAAGAAATTCAAGTGACCGAAGCACGTTTCTTCTATGGCTTCCAAA 134280 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 ||||||| || |||||||| || ||||||||||| | | || || || |||||| | | Sbjct 134281 TTGCCATAGAAAATGTCCATTCCGAGATGTACAGCCTGTTGATTGACACCTACATCCGTG 134340 Query 61376 AGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGA 61435 | | || ||| |||||| |||||||| || ||||| || || ||| |||||| | Sbjct 134341 ATCCGGTGGAGCGTGAATTTTTGTTCAACGCAATCGAAACCATTCCGTGTGTGAAGAAAA 134400 Query 61436 AAGCGGATTGGGCCTTCAATTGGATC----ACCAGTACAACGGCTACATTTGGTGAACGA 61491 |||| || ||||| || ||||||| ||| ||| | | || ||||| Sbjct 134401 AAGCAGACTGGGCTTTGCGTTGGATCGGTGACC--GCCAA--TCACCGTTCTCCGAACGT 134456 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATT-TTTCAGTGGATCGTTTGCCGCAATCTT 61550 ||| | || || || | || || || | || ||| | | | | || || |||| || Sbjct 134457 TTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCGGGCAGC-TTCGCGTCAATTTT 134515 Query 61551 TTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACG 61610 |||||||| || || || || ||||| ||| ||||||||||||| ||| |||| || || Sbjct 134516 CTGGTTGAAAAAGCGAGGCCTGATGCCAGGTTTGACCTTCAGCAACGAGCTGATCTCTCG 134575 Query 61611 CGACGAGG 61618 ||||||| Sbjct 134576 TGACGAGG 134583 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 61616 AGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGT 61675 |||| |||| || ||||| ||| |||||| | | ||| || || ||| || Sbjct 134658 AGGGATTGCACTGCGATTTCGCTTGTTTGCTTT--ATTCGC-ATTTGAAGAACAAACCAG 134714 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 | || || || ||| || | ||| | || ||||| | || ||||| |||||||||| Sbjct 134715 CCGAAGATCGAGTGCGTCAAATTATCACCGAAGCGGTCAGCATTGAACAAGAATTTCTGA 134774 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 | ||||| ||||| || || || |||||||| |||| || ||||| ||||| |||| Sbjct 134775 CCGACGCCTTGCCAGTACGTCTGATTGGCATGAACTGTGTTCTGATGTCTCAGTACATTG 134834 Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGA 61823 ||| |||||||| ||||| |||| || Sbjct 134835 AATACGTTGCCGATCGTCTTCTGGTTGA 134862 >seq68 Length=215320 Score = 104 bits (114), Expect = 2e-17 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || ||||| | || | || | |||||| | ||| ||||||||||| |||||||| || Sbjct 29435 TCGCCCCACAAATCCGCCAATCCTGGACATTCGTGAGGACACATCAGTGACCAATCTCCG 29376 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 || ||| | || ||| || ||||| |||||||| |||||||| || | ||| | Sbjct 29375 TCGGCTTCAATGCGCTTCATGAACAGATCGGGTATCCAAAGGGCGTAAAACAAATCTCTG 29316 Query 66383 GCTCGTTGCTCCTCAATGCC-GTGAT-TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 |||| | || || ||||| ||| | |||| ||| ||| || || ||||| ||||| | Sbjct 29315 GCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTCGC--GTCAAGAAAATCAAATATGTCTG 29258 Query 66441 CATGCCATGGTTCCA 66455 | ||||| ||||||| Sbjct 29257 CGTGCCAAGGTTCCA 29243 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| || || || | | |||| |||||| || | ||||||||| || || Sbjct 30924 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 30865 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || ||| | |||||||||||||| | | ||| ||||| || |||||| Sbjct 30864 TTCAGTCCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAGTTTAGCATAGTTGGGCTCG 30805 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || | || |||||||||||||| || || ||| || ||| | || || |||||| Sbjct 30804 GCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCACCCCTTTCGGCGGCCATG 30745 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 || |||| | | || || ||||| || |||||||||| ||||| |||| Sbjct 30744 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 30688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397536049696160