Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq353 154 2e-35 seq9 154 2e-35 >seq353 Length=23439 Score = 154 bits (170), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| | Sbjct 8713 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTA-ATGACTCACGCTTACTGGGAATT-C 8770 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||||||||||| |||| || ||| || | ||||| |||| Sbjct 8771 CTCGTTCAAGGGAAACAATTGCAATTCCCTATTCCATTCAAGAAAACGTTTCATTCGATT 8830 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC--GTTGAATACATCAGTGTAGCGCGCGTG 177 || | | || | |||| || |||| ||||| ||| ||||||||||||| Sbjct 8831 GCCAAACCTTTTCAGGTAAGGACGTA-ACTCACGTTGACGCTTTCATTGTAGCGCGCGTG 8889 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | |||| | ||||| ||||||||||||||||||||||||| Sbjct 8890 CAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGC 8929 >seq9 Length=435887 Score = 154 bits (170), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| | Sbjct 268172 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTA-ATGACTCACGCTTACTGGGAATT-C 268229 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||||||||||| |||| || ||| || | ||||| |||| Sbjct 268230 CTCGTTCAAGGGAAACAATTGCAATTCCCTATTCCATTCAAGAAAACGTTTCATTCGATT 268289 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC--GTTGAATACATCAGTGTAGCGCGCGTG 177 || | | || | |||| || |||| ||||| ||| ||||||||||||| Sbjct 268290 GCCAAACCTTTTCAGGTAAGGACGTA-ACTCACGTTGACGCTTTCATTGTAGCGCGCGTG 268348 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | |||| | ||||| ||||||||||||||||||||||||| Sbjct 268349 CAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGC 268388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751956646965