Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq353 107 2e-21 seq3625 80.6 3e-13 >seq353 Length=23439 Score = 107 bits (118), Expect = 2e-21 Identities = 132/177 (75%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--TGCTCGAATACATTACCAT 69 |||||||||||||||||||||| | |||||||||| | ||| ||||| ||| Sbjct 9607 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 9548 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||||||||| || | |||||||||||||| ||||| | | |||| |||||| Sbjct 9547 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 9490 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | | | | | || |||||| | ||||| || | ||||||||||||||||| Sbjct 9489 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGAT 9433 >seq3625 Length=358 Score = 80.6 bits (88), Expect = 3e-13 Identities = 120/167 (72%), Gaps = 5/167 (3%) Strand=Plus/Plus Query 22 AAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCATGGAATAATA 78 |||||||||||| |||||||||||||| || | |||| | | |||||||| Sbjct 1 AAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATG 60 Query 79 GAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGG 138 ||||||||| ||||||||||||||| ||||| | ||| | | ||||| || | || Sbjct 61 GAATAGGAC-CGCGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGATTAAGAGGG 118 Query 139 ATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | | |||||| | ||||| | | |||||||||||||||| Sbjct 119 ACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511970483040