Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq353 174 3e-41 seq9 174 3e-41 >seq353 Length=23439 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 8929 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 8870 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 8869 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGAATGAAACGTTTTCT 8811 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 8810 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 8751 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 8750 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 8714 >seq9 Length=435887 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 268388 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 268329 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 268328 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGAATGAAACGTTTTCT 268270 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 268269 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 268210 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 268209 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 268173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947143632128