Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq799 459 9e-127 seq353 459 9e-127 seq220 286 1e-74 seq830 280 5e-73 seq697 280 5e-73 seq398 280 5e-73 seq360 280 5e-73 seq248 102 3e-19 >seq799 Length=2163 Score = 459 bits (508), Expect = 9e-127 Identities = 280/297 (94%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 1391 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 1450 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1451 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 1510 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 1511 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 1570 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1571 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGA 1630 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1631 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCATCA 1687 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 1011 TTTACTCTAAGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 1070 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 1071 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 1114 >seq353 Length=23439 Score = 459 bits (508), Expect = 9e-127 Identities = 280/297 (94%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 1341 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 1400 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1401 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 1460 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 1461 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 1520 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1521 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGA 1580 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1581 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCATCA 1637 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 961 TTTACTCTAAGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 1020 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 1021 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 1064 >seq220 Length=74189 Score = 286 bits (316), Expect = 1e-74 Identities = 181/196 (92%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 69755 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 69814 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 69815 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 69874 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 69875 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 69934 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 69935 ACGAGGCATTTGGCTA 69950 Score = 170 bits (188), Expect = 6e-40 Identities = 97/99 (98%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 73615 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTG 73674 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||| || Sbjct 73675 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCATCA 73713 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 69375 TTTACTCTAAGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 69434 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 69435 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 69478 >seq830 Length=2015 Score = 280 bits (310), Expect = 5e-73 Identities = 182/200 (91%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 1865 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 1806 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 1805 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTACGCTAG 1746 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 1745 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 1686 Query 417 ACGAGGCATTTGGCTACCTT 436 ||| ||||||||||||| || Sbjct 1685 ACGGGGCATTTGGCTACATT 1666 >seq697 Length=3113 Score = 280 bits (310), Expect = 5e-73 Identities = 182/200 (91%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 1249 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 1308 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 1309 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTACGCTAG 1368 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 1369 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 1428 Query 417 ACGAGGCATTTGGCTACCTT 436 ||| ||||||||||||| || Sbjct 1429 ACGGGGCATTTGGCTACATT 1448 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 867 TTTACTCTAAGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 926 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 927 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 970 >seq398 Length=15062 Score = 280 bits (310), Expect = 5e-73 Identities = 182/200 (91%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 7690 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 7631 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 7630 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTACGCTAG 7571 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 7570 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 7511 Query 417 ACGAGGCATTTGGCTACCTT 436 ||| ||||||||||||| || Sbjct 7510 ACGGGGCATTTGGCTACATT 7491 Score = 102 bits (112), Expect = 3e-19 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| | ||| ||||||| ||| |||| ||||||||||||||| |||| || Sbjct 8072 TTTACTCTAAACGAGGTTTCTGTCCTCGCTGAGGTTACCTTAGGACACCTGCATTATCGT 8013 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAC 107 ||||||||||| ||||||||| |||||||||| ||||| Sbjct 8012 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGAC 7974 >seq360 Length=20988 Score = 280 bits (310), Expect = 5e-73 Identities = 182/200 (91%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 5289 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 5230 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 5229 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTACGCTAG 5170 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 5169 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 5110 Query 417 ACGAGGCATTTGGCTACCTT 436 ||| ||||||||||||| || Sbjct 5109 ACGGGGCATTTGGCTACATT 5090 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 5671 TTTACTCTAAGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 5612 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 5611 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 5568 >seq248 Length=62712 Score = 102 bits (112), Expect = 3e-19 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 50596 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTCAC 50655 Query 497 A 497 | Sbjct 50656 A 50656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635102689248