Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq799 102 1e-19 seq697 102 1e-19 seq353 102 1e-19 seq220 102 1e-19 >seq799 Length=2163 Score = 102 bits (112), Expect = 1e-19 Identities = 92/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| || |||| | |||||| |||| | |||| | | || Sbjct 684 GTACGAGAGGAACCGCGGGAT-CAGAC-ATTTGGTTCATGCGCTCGGCTGAAAGGCCGGT 627 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||| ||||||| ||||||| ||||||||||||||||||||||| Sbjct 626 GGCGCGAAGCTAGCATCTGCAAGATTATGACTGAACGCCTCTAAGTCAGAATC 574 >seq697 Length=3113 Score = 102 bits (112), Expect = 1e-19 Identities = 92/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| || |||| | |||||| |||| | |||| | | || Sbjct 540 GTACGAGAGGAACCGCGGGAT-CAGAC-ATTTGGTTCATGCGCTCGGCTGAAAGGCCGGT 483 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||| ||||||| ||||||| ||||||||||||||||||||||| Sbjct 482 GGCGCGAAGCTAGCATCTGCAAGATTATGACTGAACGCCTCTAAGTCAGAATC 430 >seq353 Length=23439 Score = 102 bits (112), Expect = 1e-19 Identities = 92/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| || |||| | |||||| |||| | |||| | | || Sbjct 634 GTACGAGAGGAACCGCGGGAT-CAGAC-ATTTGGTTCATGCGCTCGGCTGAAAGGCCGGT 577 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||| ||||||| ||||||| ||||||||||||||||||||||| Sbjct 576 GGCGCGAAGCTAGCATCTGCAAGATTATGACTGAACGCCTCTAAGTCAGAATC 524 >seq220 Length=74189 Score = 102 bits (112), Expect = 1e-19 Identities = 92/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| || |||| | |||||| |||| | |||| | | || Sbjct 69048 GTACGAGAGGAACCGCGGGAT-CAGAC-ATTTGGTTCATGCGCTCGGCTGAAAGGCCGGT 68991 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||| ||||||| ||||||| ||||||||||||||||||||||| Sbjct 68990 GGCGCGAAGCTAGCATCTGCAAGATTATGACTGAACGCCTCTAAGTCAGAATC 68938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819152772864