Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq353 367 4e-99 seq4355 179 1e-42 seq3741 127 6e-27 >seq353 Length=23439 Score = 367 bits (406), Expect = 4e-99 Identities = 400/528 (76%), Gaps = 30/528 (6%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 2666 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 2725 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2726 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 2785 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 2786 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 2845 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 2846 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 2905 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG---------------- 283 | || ||||||||| | | ||||||| || ||||||| || Sbjct 2906 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAACAGTTTCGACGTTCAACAT 2965 Query 284 -CCCCGAAGGGCGTT-GGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGT 338 | | || | |||| ||||||| ||||||||| ||| | || | ||| | || Sbjct 2966 TCGTCAAACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCAATTCAGTTGAAGT 3025 Query 339 TTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG-TAGTAAGGTACTATCA 396 |||| || ||||||||||||||||||||||| |||||||||| | ||||| || Sbjct 3026 TTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGATTGTAAG-----TTCT 3080 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||| | ||| | ||||||||||||||| | |||||| | || | | | | || Sbjct 3081 AATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCTTCACT-TTTAAACAGTGTGTGCT 3139 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3140 TACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 3187 Score = 361 bits (400), Expect = 2e-97 Identities = 399/528 (76%), Gaps = 30/528 (6%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| |||| || | |||| ||| || || ||||| | |||||||||| Sbjct 9834 GTACTCATTTCAATCACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 9893 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9894 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 9953 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 9954 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 10013 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 10014 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 10073 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG---------------- 283 | || ||||||||| | | ||||||| || ||||||| || Sbjct 10074 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAACAGTTTCGACGTTCAACAT 10133 Query 284 -CCCCGAAGGGCGTT-GGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGT 338 | | || | |||| ||||||| ||||||||| ||| | || | ||| | || Sbjct 10134 TCGTCAAACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCAATTCAGTTGAAGT 10193 Query 339 TTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG-TAGTAAGGTACTATCA 396 |||| || ||||||||||||||||||||||| |||||||||| | ||||| || Sbjct 10194 TTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGATTGTAAG-----TTCT 10248 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||| | ||| | ||||||||||||||| | | ||| | || | | | | || Sbjct 10249 AATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCATAACT-TTTAAACAGTGTGTGCT 10307 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10308 TACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 10355 >seq4355 Length=298 Score = 179 bits (198), Expect = 1e-42 Identities = 140/166 (84%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | | | | | |||| Sbjct 94 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 153 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 154 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 213 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 214 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 258 >seq3741 Length=349 Score = 127 bits (140), Expect = 6e-27 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 222 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 281 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 341 Query 121 TCTCAGGC 128 |||||||| Sbjct 342 TCTCAGGC 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510310116096