Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq146 109 4e-19
seq263 89.7 4e-13
>seq146
Length=107015
Score = 109 bits (120), Expect = 4e-19
Identities = 138/186 (74%), Gaps = 4/186 (2%)
Strand=Plus/Minus
Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346
||||| | || || |||||||| |||||||| || || ||| | || ||| |||
Sbjct 10859 GGACATTCATGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAAT 10800
Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTG 66405
|||||||||||||||||||| || || | ||| || ||||| | || || | ||| |||
Sbjct 10799 AGATCAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTG 10740
Query 66406 AT-TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464
| |||| ||| ||| || || ||||| ||||| || ||||| ||||||| |||| |
Sbjct 10739 TTCTTTTTCGC--GTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCG 10682
Query 66465 CGAACG 66470
| ||||
Sbjct 10681 CAAACG 10676
Score = 107 bits (118), Expect = 2e-18
Identities = 166/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
|| || ||||| || || || | | |||| |||||| || | ||||||||| || ||
Sbjct 12389 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 12330
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197
|| || || ||| | ||||||||||| |||| ||||| |||||||||||||||
Sbjct 12329 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 12270
Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257
|| | || |||||||||||||| || || ||| | || | || || ||||||
Sbjct 12269 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCATG 12210
Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314
|| |||| | | || || ||||| || |||||||||| ||||| ||||
Sbjct 12209 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 12153
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 67067 TTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGTAGAGTC 67126
||||||| ||| || ||| || || ||||||| |||| || |||||| ||
Sbjct 9709 TTGTGCAAATTGCTGACGGCTATGCGTGCGGCCAATGTCGCATAGTCCGGATGTTTTGTA 9650
Query 67127 ATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACACCAGGA 67186
|||| |||||| | ||||||||||||| | || | ||| | || |||||||| ||
Sbjct 9649 GTCATTGTGGCGGAAATTTCAGCGGCCAAATTGTCCAATTCGACAGTTGTCACACCTTGA 9590
Query 67187 TACAGGCCAGCAACGACTTT 67206
|||||||| |||| ||||||
Sbjct 9589 TACAGGCCGGCAATGACTTT 9570
>seq263
Length=55217
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764
|| ||||| | || ||||| ||||||||||| ||||| ||||| || | || |||
Sbjct 23976 GAAGCGGTCAGCATTGAACAAGAATTTCTGACCGACGCGTTGCCGGTACGTTTGATTGGC 24035
Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823
||||| |||| || ||||| ||||| ||||||| |||||||| ||||| |||| ||
Sbjct 24036 ATGAACTGTGTTCTGATGTCTCAGTACATTGAATACGTTGCCGATCGTCTACTGGTTGA 24094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397539165262640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |