Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1636 154 2e-35 seq1614 154 2e-35 seq3945 87.8 3e-15 >seq1636 Length=36320 Score = 154 bits (170), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| | Sbjct 18435 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTA-ATGACTCACGCTTACTGGGAATT-C 18378 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||||||||||| |||| || ||| || | ||||| |||| Sbjct 18377 CTCGTTCAAGGGAAACAATTGCAATTCCCTATTCCATTCAAGAAAACGTTTCATTCGATT 18318 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC--GTTGAATACATCAGTGTAGCGCGCGTG 177 || | | || | |||| || |||| ||||| ||| ||||||||||||| Sbjct 18317 GCCAAACCTTTTCAGGTAAGGACGTA-ACTCACGTTGACGCTTTCATTGTAGCGCGCGTG 18259 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | |||| | ||||| ||||||||||||||||||||||||| Sbjct 18258 CAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGC 18219 >seq1614 Length=35330 Score = 154 bits (170), Expect = 2e-35 Identities = 170/220 (77%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| | Sbjct 21728 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTA-ATGACTCACGCTTACTGGGAATT-C 21785 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||||||||||| |||| || ||| || | ||||| |||| Sbjct 21786 CTCGTTCAAGGGAAACAATTGCAATTCCCTATTCCATTCAAGAAAACGTTTCATTCGATT 21845 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC--GTTGAATACATCAGTGTAGCGCGCGTG 177 || | | || | |||| || |||| ||||| ||| ||||||||||||| Sbjct 21846 GCCAAACCTTTTCAGGTAAGGACGTA-ACTCACGTTGACGCTTTCATTGTAGCGCGCGTG 21904 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | |||| | ||||| ||||||||||||||||||||||||| Sbjct 21905 CAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGC 21944 >seq3945 Length=1014 Score = 87.8 bits (96), Expect = 3e-15 Identities = 63/70 (90%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||| | ||||||| |||||||| |||| ||| Sbjct 661 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TAATGACTCACGCTTACTGGGAA-TTC 718 Query 61 CTCGTTGAAG 70 |||||| ||| Sbjct 719 CTCGTTCAAG 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751969956660