Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1636 185 2e-44 seq1614 185 2e-44 seq100 174 3e-41 >seq1636 Length=36320 Score = 185 bits (204), Expect = 2e-44 Identities = 194/249 (78%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| |||||||||| | ||| ||||| |||| Sbjct 17541 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 17600 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG-TAATGA 189 |||||||||||||| || | |||||||||||||||||||| | | |||| | |||||| Sbjct 17601 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 17658 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || | ||| | || |||||| | ||||| || ||||||||||||||||||| Sbjct 17659 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGC 17718 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| ||| | ||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 17719 AGCAAGATGAACAATTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 17777 Query 310 AGTTAGGGG 318 |||||| || Sbjct 17778 AGTTAGAGG 17786 >seq1614 Length=35330 Score = 185 bits (204), Expect = 2e-44 Identities = 194/249 (78%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| |||||||||| | ||| ||||| |||| Sbjct 22622 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 22563 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG-TAATGA 189 |||||||||||||| || | |||||||||||||||||||| | | |||| | |||||| Sbjct 22562 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 22505 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || | ||| | || |||||| | ||||| || ||||||||||||||||||| Sbjct 22504 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGC 22445 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| ||| | ||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 22444 AGCAAGATGAACAATTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 22386 Query 310 AGTTAGGGG 318 |||||| || Sbjct 22385 AGTTAGAGG 22377 >seq100 Length=672 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 183 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 242 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 243 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 301 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 302 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 361 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 362 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 421 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 422 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915162257152