Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T8_20[genbank_20GCA_5F001447745.1_202015-11-24] 4,124 sequences; 49,331,761 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1636 370 3e-100 seq1614 370 3e-100 >seq1636 Length=36320 Score = 370 bits (410), Expect = 3e-100 Identities = 400/528 (76%), Gaps = 29/528 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 17314 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 17255 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17254 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 17195 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 17194 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 17135 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 17134 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 17075 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG---------------- 283 | || ||||||||| | | ||||||| || ||||||| || Sbjct 17074 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAACAGTTTCGACGTTCAACAT 17015 Query 284 -CCCCGAAGGGCGTT-GGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGT 338 | || || | |||| ||||||| ||||||||| ||| | || | ||| | || Sbjct 17014 TCGCCAAACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCAATTCAGTTGAAGT 16955 Query 339 TTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG-TAGTAAGGTACTATCA 396 |||| || ||||||||||||||||||||||| |||||||||| | ||||| || Sbjct 16954 TTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGATTGTAAG-----TTCT 16900 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||| | ||| | ||||||||||||||| | |||||| | | | | | | || Sbjct 16899 AATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCTTCACTTTTAAAACAGTGTGTGCT 16840 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16839 TACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 16792 >seq1614 Length=35330 Score = 370 bits (410), Expect = 3e-100 Identities = 400/528 (76%), Gaps = 29/528 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 22849 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 22908 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 22909 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 22968 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 22969 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 23028 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 23029 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 23088 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG---------------- 283 | || ||||||||| | | ||||||| || ||||||| || Sbjct 23089 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAACAGTTTCGACGTTCAACAT 23148 Query 284 -CCCCGAAGGGCGTT-GGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGT 338 | || || | |||| ||||||| ||||||||| ||| | || | ||| | || Sbjct 23149 TCGCCAAACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCAATTCAGTTGAAGT 23208 Query 339 TTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG-TAGTAAGGTACTATCA 396 |||| || ||||||||||||||||||||||| |||||||||| | ||||| || Sbjct 23209 TTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGATTGTAAG-----TTCT 23263 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||| | ||| | ||||||||||||||| | |||||| | | | | | | || Sbjct 23264 AATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCTTCACTTTTAAAACAGTGTGTGCT 23323 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 23324 TACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 23371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510337711104