Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq308 244 2e-62 seq267 210 3e-52 seq176 210 3e-52 seq1387 80.6 4e-13 seq21 80.6 4e-13 >seq308 Length=13605 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 4570 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 4628 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 4629 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 4687 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 4688 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 4747 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 4748 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 4807 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 4808 ATCAATCTGTC 4818 >seq267 Length=25007 Score = 210 bits (232), Expect = 3e-52 Identities = 200/250 (80%), Gaps = 12/250 (5%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CT 74 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| || Sbjct 18180 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCTCT 18239 Query 75 CAAACTTCCATTGGCTGGAA---GCCAATAGTCCCTCTAAGAAGCCAGC--CACCAACCA 129 | | || | | || |||| |||||||||||||| | | ||| || | Sbjct 18240 TTTTCGTGCA--GCTTTCAATTTGCCA---GTCCCTCTAAGAAGTGATCAGCACAAAAAA 18294 Query 130 TAGTCGA-TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || ||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 18295 TACAATACTGTCACTATTTAATAGGGTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 18354 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 18355 AATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTG 18414 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 18415 TCAATCTGTC 18424 >seq176 Length=87529 Score = 210 bits (232), Expect = 3e-52 Identities = 200/250 (80%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CT 74 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| || Sbjct 18204 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCTCT 18145 Query 75 CAAACTTCCATTGGCTGGAA---GCCAATAGTCCCTCTAAGAAGCCAGC--CACCAACCA 129 | | || | | || |||| |||||||||||||| | | ||| || | Sbjct 18144 TTTTCGTGCA--GCTTTCAATTTGCCA---GTCCCTCTAAGAAGTGATCAGCACAAAAAA 18090 Query 130 TAGTCGA-TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || ||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 18089 TACAATACTGTCACTATTTAATAGGGTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 18030 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 18029 AATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTG 17970 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 17969 TCAATCTGTC 17960 >seq1387 Length=470 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| Sbjct 62 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGC 6 >seq21 Length=411193 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| Sbjct 78315 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGC 78371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796755600312