Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq308 91.5 9e-17 seq3019 86.0 4e-15 seq1387 86.0 4e-15 seq267 86.0 4e-15 seq176 86.0 4e-15 seq21 86.0 4e-15 >seq308 Length=13605 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 4372 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 4429 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 4430 TAAT-CAACGCAAGCT 4444 >seq3019 Length=321 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 195 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 138 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 137 TAAT-CAACGCGAGCT 123 >seq1387 Length=470 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 262 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 205 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 204 TAAT-CAACGCGAGCT 190 >seq267 Length=25007 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 17980 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 18037 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 18038 TAAT-CAACGCGAGCT 18052 >seq176 Length=87529 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 18404 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 18347 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 18346 TAAT-CAACGCGAGCT 18332 >seq21 Length=411193 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 78115 CTCACTAAATCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 78172 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 78173 TAAT-CAACGCGAGCT 78187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300783779360