Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq308 82.4 9e-14 seq267 82.4 9e-14 seq176 82.4 9e-14 >seq308 Length=13605 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| ||| ||||||||| |||||||| ||| |||| | |||| Sbjct 5210 AAACCAACAAAATAGAACCGCG-GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG 5268 Query 70 TAA---GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 |||||||||||||||||||||||| |||| ||||| Sbjct 5269 GCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 5309 >seq267 Length=25007 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | || |||||||||||||||||| ||||| ||| Sbjct 18815 AAACCAACAAAATAGAACCG-AGATCGTATTCTATTATTCCATGCACCATTATTCAGGCA 18873 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 | | |||||||||| |||||||||||| |||| |||||| Sbjct 18874 TCACAACCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAAA 18914 >seq176 Length=87529 Score = 82.4 bits (90), Expect = 9e-14 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | || |||||||||||||||||| ||||| ||| Sbjct 17569 AAACCAACAAAATAGAACCG-AGATCGTATTCTATTATTCCATGCACCATTATTCAGGCA 17511 Query 70 TAAG--CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAA 108 | | |||||||||| |||||||||||| |||| |||||| Sbjct 17510 TCACAACCTGCTTTGAGCACTCTAATTTTTTCAAAGTAAAA 17470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595166833968