Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq308 197 3e-48 seq1387 174 3e-41 seq267 174 3e-41 seq176 174 3e-41 seq21 174 3e-41 seq3019 89.7 1e-15 >seq308 Length=13605 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 4668 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 4611 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 4610 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 4551 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 4550 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 4491 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 4490 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 4431 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 4430 AAGTCCCTGCCCTTTGTA 4413 >seq1387 Length=470 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 6 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 65 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 66 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGAATGAAACGTTTTCT 124 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 125 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 184 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 185 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 221 >seq267 Length=25007 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 18236 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 18177 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 18176 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGAATGAAACGTTTTCT 18118 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 18117 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 18058 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 18057 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 18021 >seq176 Length=87529 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 18148 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 18207 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 18208 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGAATGAAACGTTTTCT 18266 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 18267 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 18326 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 18327 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 18363 >seq21 Length=411193 Score = 174 bits (192), Expect = 3e-41 Identities = 170/217 (78%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||| || Sbjct 78371 GCAATAACAGGTCTGTGATGCCCTTCGATGTCCGGGGCTGCACGCGCGCTACAATGAAAG 78312 Query 174 AGCCAACG--AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCG 231 | ||||| |||| | |||| | | || | | || |||| | |||| | || Sbjct 78311 CGTCAACGTGAGTT-ACGTCCTTACCTGAAAAGGTTTGGCAATCGAATGAAACGTTTTCT 78253 Query 232 TGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTG 291 || || |||| | ||||||||| || | ||| |||||||||| || |||||||| | | Sbjct 78252 TGAATGGAATAGGGAATTGCAATTGTTTCCCTTGAACGAGGAATTCCCAGTAAGCGTGAG 78193 Query 292 TCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||| |||||||||||||||||||||||||||| Sbjct 78192 TCATTAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 78156 >seq3019 Length=321 Score = 89.7 bits (98), Expect = 1e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCC 321 ||| |||||||||| || |||||||| | ||||| ||| ||||||||||||||||||||| Sbjct 88 CTTGAACGAGGAATTCCCAGTAAGCGTGAGTCATTAGCTCGCGTTGATTACGTCCCTGCC 147 Query 322 CTTTGTA 328 ||||||| Sbjct 148 CTTTGTA 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947145517056