Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq308 383 5e-104 seq267 370 3e-100 seq176 370 3e-100 >seq308 Length=13605 Score = 383 bits (424), Expect = 5e-104 Identities = 420/558 (75%), Gaps = 59/558 (11%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 5542 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 5601 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5602 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 5661 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 5662 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 5721 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 5722 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 5781 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------- 279 || | |||||| | | ||||| || ||||||| Sbjct 5782 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCC 5841 Query 280 ------GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTT 325 |||||| || || | ||||| |||| |||| |||||| ||| | | Sbjct 5842 CCGGCCGGAGCCGGGAGGGAGCTCACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 5900 Query 326 CC-------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 || |||| ||||| | |||||||||||||||||||||||||| | Sbjct 5901 CCCCCCCGGGAAG-GGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAG 5959 Query 372 TTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 ||||||| |||| | || | | | |||| ||| |||||||||||||||||||||| Sbjct 5960 TTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATT 6019 Query 427 CGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 ||||||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 6020 CGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAA 6079 Query 487 GCATATGACTACTGGCAG 504 ||||||| |||||||||| Sbjct 6080 GCATATG-CTACTGGCAG 6096 >seq267 Length=25007 Score = 370 bits (410), Expect = 3e-100 Identities = 400/528 (76%), Gaps = 29/528 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 19141 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 19200 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19201 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 19260 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 19261 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 19320 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 19321 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 19380 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG---------------- 283 | || ||||||||| | | ||||||| || ||||||| || Sbjct 19381 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAACAGTTTCGACGTTCAACAT 19440 Query 284 -CCCCGAAGGGCGTT-GGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGT 338 | || || | |||| ||||||| ||||||||| ||| | || | ||| | || Sbjct 19441 TCGCCAAACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCAATTCAGTTGAAGT 19500 Query 339 TTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG-TAGTAAGGTACTATCA 396 |||| || ||||||||||||||||||||||| |||||||||| | ||||| || Sbjct 19501 TTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGATTGTAAG-----TTCT 19555 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||| | ||| | ||||||||||||||| | |||||| | | | | | | || Sbjct 19556 AATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCTTCACTTTTAAAACAGTGTGTGCT 19615 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19616 TACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 19663 >seq176 Length=87529 Score = 370 bits (410), Expect = 3e-100 Identities = 400/528 (76%), Gaps = 29/528 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 17243 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 17184 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 17183 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 17124 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 17123 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 17064 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 17063 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 17004 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAG---------------- 283 | || ||||||||| | | ||||||| || ||||||| || Sbjct 17003 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAACAGTTTCGACGTTCAACAT 16944 Query 284 -CCCCGAAGGGCGTT-GGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGT 338 | || || | |||| ||||||| ||||||||| ||| | || | ||| | || Sbjct 16943 TCGCCAAACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCAATTCAGTTGAAGT 16884 Query 339 TTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG-TAGTAAGGTACTATCA 396 |||| || ||||||||||||||||||||||| |||||||||| | ||||| || Sbjct 16883 TTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGATTGTAAG-----TTCT 16829 Query 397 AATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACT 456 ||||||| | ||| | ||||||||||||||| | |||||| | | | | | | || Sbjct 16828 AATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCTTCACTTTTAAAACAGTGTGTGCT 16769 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16768 TACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 16721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510313121792