Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24]
5,752 sequences; 49,075,249 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq118 107 2e-18
seq72 89.7 4e-13
>seq118
Length=130256
Score = 107 bits (118), Expect = 2e-18
Identities = 166/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
|| || ||||| || || || | | |||| |||||| || | ||||||||| || ||
Sbjct 94142 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 94201
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197
|| || || ||| | ||||||||||| |||| ||||| |||||||||||||||
Sbjct 94202 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 94261
Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257
|| | || |||||||||||||| || || ||| | || | || || ||||||
Sbjct 94262 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCATG 94321
Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314
|| |||| | | || || ||||| || |||||||||| ||||| ||||
Sbjct 94322 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 94378
Score = 105 bits (116), Expect = 5e-18
Identities = 128/171 (75%), Gaps = 4/171 (2%)
Strand=Plus/Plus
Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346
||||| | || || |||||||| |||||||| || || ||| | || ||| |||
Sbjct 95677 GGACATTCATGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAAT 95736
Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTG 66405
|||||||||||||||||||| || || | ||| || ||||| | || || | ||| |||
Sbjct 95737 AGATCAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTG 95796
Query 66406 AT-TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCA 66455
| |||| ||| ||| || || ||||| ||||| || ||||| |||||||
Sbjct 95797 TTCTTTTTCGC--GTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCA 95845
Score = 96.9 bits (106), Expect = 3e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096
||| || || | || ||| | ||||||||||||||||| || || ||| || ||
Sbjct 95367 CTCATCGGGTGAGGAATATTGAACAATTTCGGTGCACAGGTTTGAACATTTTATAGTACC 95426
Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156
|| ||| || ||||| || | |||||| ||||| ||||| | ||| |||| |||||
Sbjct 95427 CAGATTTTGCTGATTCGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCC 95486
Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189
||| |||| ||| |||||||| || |||| |||
Sbjct 95487 GGTTTCAATTTGAGACTCAATAATTGCGTACCA 95519
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 67067 TTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGTAGAGTC 67126
||||||| ||| || ||| || || ||||||| |||| || |||||| ||
Sbjct 96827 TTGTGCAAATTGCTGACGGCTATGCGTGCGGCCAATGTCGCATAGTCCGGATGTTTTGTA 96886
Query 67127 ATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACACCAGGA 67186
|||| |||||| | ||||||||||||| | || | ||| | || |||||||| ||
Sbjct 96887 GTCATTGTGGCGGAAATTTCAGCGGCCAAATTGTCCAATTCGACAGTTGTCACACCTTGA 96946
Query 67187 TACAGGCCAGCAACGACTTT 67206
|||||||| |||| ||||||
Sbjct 96947 TACAGGCCGGCAATGACTTT 96966
>seq72
Length=199954
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764
|| ||||| | || ||||| ||||||||||| ||||| ||||| || | || |||
Sbjct 23878 GAAGCGGTCAGCATTGAACAAGAATTTCTGACCGACGCGTTGCCGGTACGTTTGATTGGC 23937
Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823
||||| |||| || ||||| ||||| ||||||| |||||||| ||||| |||| ||
Sbjct 23938 ATGAACTGTGTTCTGATGTCTCAGTACATTGAATACGTTGCCGATCGTCTACTGGTTGA 23996
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397540129489280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |