Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T9_20[genbank_20GCA_5F001447505.1_202015-11-24] 5,752 sequences; 49,075,249 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq118 107 2e-18 seq72 89.7 4e-13 >seq118 Length=130256 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| || || || | | |||| |||||| || | ||||||||| || || Sbjct 94142 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 94201 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || ||| | ||||||||||| |||| ||||| ||||||||||||||| Sbjct 94202 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 94261 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || | || |||||||||||||| || || ||| | || | || || |||||| Sbjct 94262 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCCATG 94321 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 || |||| | | || || ||||| || |||||||||| ||||| |||| Sbjct 94322 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 94378 Score = 105 bits (116), Expect = 5e-18 Identities = 128/171 (75%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 ||||| | || || |||||||| |||||||| || || ||| | || ||| ||| Sbjct 95677 GGACATTCATGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAAT 95736 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTG 66405 |||||||||||||||||||| || || | ||| || ||||| | || || | ||| ||| Sbjct 95737 AGATCAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTG 95796 Query 66406 AT-TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCA 66455 | |||| ||| ||| || || ||||| ||||| || ||||| ||||||| Sbjct 95797 TTCTTTTTCGC--GTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCA 95845 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096 ||| || || | || ||| | ||||||||||||||||| || || ||| || || Sbjct 95367 CTCATCGGGTGAGGAATATTGAACAATTTCGGTGCACAGGTTTGAACATTTTATAGTACC 95426 Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156 || ||| || ||||| || | |||||| ||||| ||||| | ||| |||| ||||| Sbjct 95427 CAGATTTTGCTGATTCGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCC 95486 Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189 ||| |||| ||| |||||||| || |||| ||| Sbjct 95487 GGTTTCAATTTGAGACTCAATAATTGCGTACCA 95519 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 67067 TTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGTAGAGTC 67126 ||||||| ||| || ||| || || ||||||| |||| || |||||| || Sbjct 96827 TTGTGCAAATTGCTGACGGCTATGCGTGCGGCCAATGTCGCATAGTCCGGATGTTTTGTA 96886 Query 67127 ATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACACCAGGA 67186 |||| |||||| | ||||||||||||| | || | ||| | || |||||||| || Sbjct 96887 GTCATTGTGGCGGAAATTTCAGCGGCCAAATTGTCCAATTCGACAGTTGTCACACCTTGA 96946 Query 67187 TACAGGCCAGCAACGACTTT 67206 |||||||| |||| |||||| Sbjct 96947 TACAGGCCGGCAATGACTTT 96966 >seq72 Length=199954 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || ||||| | || ||||| ||||||||||| ||||| ||||| || | || ||| Sbjct 23878 GAAGCGGTCAGCATTGAACAAGAATTTCTGACCGACGCGTTGCCGGTACGTTTGATTGGC 23937 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 ||||| |||| || ||||| ||||| ||||||| |||||||| ||||| |||| || Sbjct 23938 ATGAACTGTGTTCTGATGTCTCAGTACATTGAATACGTTGCCGATCGTCTACTGGTTGA 23996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397540129489280