Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11] 6,863 sequences; 63,525,422 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7 118 8e-22 seq5 89.7 4e-13 >seq7 Length=809302 Score = 118 bits (130), Expect = 8e-22 Identities = 140/186 (75%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 ||||| | ||| || |||||||| |||||||| || || ||| | || ||| ||| Sbjct 314119 GGACATTCGTGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAAT 314060 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTG 66405 ||||||||||||||||||||||| || | ||| || ||||| | || || | ||| ||| Sbjct 314059 AGATCAGGTATCCAGAGGGCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTG 314000 Query 66406 AT-TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464 | |||| ||| ||| || || ||||| ||||| || ||||| ||||||| |||| | Sbjct 313999 TTCTTTTTCGC--GTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCG 313942 Query 66465 CGAACG 66470 | |||| Sbjct 313941 CAAACG 313936 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| || || || | | |||| |||||| || | ||||||||| || || Sbjct 287870 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 287811 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || ||| | ||||||||||| |||| ||||| ||||||||||||||| Sbjct 287810 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 287751 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || | || |||||||||||||| || || ||| | || | || || |||||| Sbjct 287750 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCATG 287691 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 || |||| | | || || ||||| || |||||||||| ||||| |||| Sbjct 287690 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 287634 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| || || || | | |||| |||||| || | ||||||||| || || Sbjct 315634 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 315575 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || ||| | ||||||||||| |||| ||||| ||||||||||||||| Sbjct 315574 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 315515 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || | || |||||||||||||| || || ||| | || | || || |||||| Sbjct 315514 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCATG 315455 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 || |||| | | || || ||||| || |||||||||| ||||| |||| Sbjct 315454 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 315398 >seq5 Length=5663831 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || ||||| | || ||||| ||||||||||| ||||| ||||| || | || ||| Sbjct 1930457 GAAGCGGTCAGCATTGAACAAGAATTTCTGACCGACGCGTTGCCGGTACGTTTGATTGGC 1930516 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 ||||| |||| || ||||| ||||| ||||||| |||||||| ||||| |||| || Sbjct 1930517 ATGAACTGTGTTCTGATGTCTCAGTACATTGAATACGTTGCCGATCGTCTTCTGGTTGA 1930575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534746294320