Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20spiralis_20[refseq_20GCF_5F000181795.1_202011-01-11]
6,863 sequences; 63,525,422 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq7 118 8e-22
seq5 89.7 4e-13
>seq7
Length=809302
Score = 118 bits (130), Expect = 8e-22
Identities = 140/186 (75%), Gaps = 4/186 (2%)
Strand=Plus/Minus
Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346
||||| | ||| || |||||||| |||||||| || || ||| | || ||| |||
Sbjct 314119 GGACATTCGTGAGGGCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAAT 314060
Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTG 66405
||||||||||||||||||||||| || | ||| || ||||| | || || | ||| |||
Sbjct 314059 AGATCAGGTATCCAGAGGGCGTAAAACAAATCTCGCGCTCGGTTTTCTTCGACGCCTGTG 314000
Query 66406 AT-TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464
| |||| ||| ||| || || ||||| ||||| || ||||| ||||||| |||| |
Sbjct 313999 TTCTTTTTCGC--GTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCG 313942
Query 66465 CGAACG 66470
| ||||
Sbjct 313941 CAAACG 313936
Score = 107 bits (118), Expect = 2e-18
Identities = 166/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
|| || ||||| || || || | | |||| |||||| || | ||||||||| || ||
Sbjct 287870 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 287811
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197
|| || || ||| | ||||||||||| |||| ||||| |||||||||||||||
Sbjct 287810 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 287751
Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257
|| | || |||||||||||||| || || ||| | || | || || ||||||
Sbjct 287750 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCATG 287691
Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314
|| |||| | | || || ||||| || |||||||||| ||||| ||||
Sbjct 287690 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 287634
Score = 107 bits (118), Expect = 2e-18
Identities = 166/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
|| || ||||| || || || | | |||| |||||| || | ||||||||| || ||
Sbjct 315634 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 315575
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197
|| || || ||| | ||||||||||| |||| ||||| |||||||||||||||
Sbjct 315574 TTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCG 315515
Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257
|| | || |||||||||||||| || || ||| | || | || || ||||||
Sbjct 315514 GCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCGGCGGCCATG 315455
Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314
|| |||| | | || || ||||| || |||||||||| ||||| ||||
Sbjct 315454 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 315398
>seq5
Length=5663831
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764
|| ||||| | || ||||| ||||||||||| ||||| ||||| || | || |||
Sbjct 1930457 GAAGCGGTCAGCATTGAACAAGAATTTCTGACCGACGCGTTGCCGGTACGTTTGATTGGC 1930516
Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823
||||| |||| || ||||| ||||| ||||||| |||||||| ||||| |||| ||
Sbjct 1930517 ATGAACTGTGTTCTGATGTCTCAGTACATTGAATACGTTGCCGATCGTCTTCTGGTTGA 1930575
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397534746294320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |