Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq256 185 2e-44 seq288 174 3e-41 >seq256 Length=33707 Score = 185 bits (204), Expect = 2e-44 Identities = 194/249 (78%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCAT 130 |||||||||||||||||||||||| |||||||||| | ||| ||||| |||| Sbjct 24485 TTTTACTTTGAAAAAATTAGAGTGCTCAAAGCAGGTTGTGATGCCTGAATAATGGTGCAT 24426 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG-TAATGA 189 |||||||||||||| || | |||||||||||||||||||| | | |||| | |||||| Sbjct 24425 GGAATAATAGAATACGATCT-CGGTTCTATTTTGTTGGTTT-TCGAACCGGAGATAATGA 24368 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 || | ||| | || |||||| | ||||| || ||||||||||||||||||| Sbjct 24367 TTGAAAGGAACAGACGGGGGCATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGC 24308 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 |||| ||| | ||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 24307 AGCAAGATGAACAATTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 24249 Query 310 AGTTAGGGG 318 |||||| || Sbjct 24248 AGTTAGAGG 24240 >seq288 Length=13935 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 5129 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 5188 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 5189 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 5247 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 5248 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 5307 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 5308 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 5367 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 5368 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 5404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915100801472