Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq288 149 3e-33 seq2516 131 7e-28 seq256 125 3e-26 seq839 89.7 2e-15 >seq288 Length=13935 Score = 149 bits (164), Expect = 3e-33 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||| |||||||||||||||||||||||||||| |||| |||| Sbjct 9799 GAGCACGAGCGTACGCGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 9858 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 9859 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 9918 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 9919 TGGGTATAGGGGCGA 9933 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 8767 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 8826 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 8827 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 8886 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 8887 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 8926 >seq2516 Length=451 Score = 131 bits (144), Expect = 7e-28 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| ||||||||||||||||||||||| || ||| ||||||||| |||||| |||||| Sbjct 1 TGGTACCCGAAAGATGGTGAACTATGCTTGGCCAGGATGAAGCCAGGGGAAACCCTGGTG 60 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || |||| ||||| ||||||||||||||| || | || |||||||||||| Sbjct 61 GAGGTCCGAAGCGTTTCTGACGTGCAAATCGATCGCCAGAGCTGAGTATAGGGGCGA 117 >seq256 Length=33707 Score = 125 bits (138), Expect = 3e-26 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||| Sbjct 20301 TGGTACCCGAAAGATGGTGAACTATGCTTGAGCAGAATGAAGCCAGAGGAAACTCTGGTG 20242 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | ||| |||||| || |||||||||| ||||| | ||| || ||||||||| Sbjct 20241 GAAGTTCGTAGCGGTGTTGACGTGCAAATCACTCGTCTGACTTGAGTGTAGGGGCGA 20185 Score = 120 bits (132), Expect = 1e-24 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||| ||| || |||||| | || ||| ||||||| || | || ||||| Sbjct 21310 CGAGTCGGGTTGCTTGAGACTGCAGCCCAAAGCGGGTGGTAAATCTCACCCAAGACTAAA 21251 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 |||| | ||||||||||||| ||||||| | || ||||| ||||||| ||| || | Sbjct 21250 TATTCGTACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTCTGAA 21191 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || |||||||| ||||| ||| || || Sbjct 21190 GAGAGAGTTCAACAGGACGTGAAACCGTTGACAGGCAAACG 21150 >seq839 Length=1086 Score = 89.7 bits (98), Expect = 2e-15 Identities = 96/123 (78%), Gaps = 3/123 (2%) Strand=Plus/Plus Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCA-GAGACCGATAGCGCACAAGTAGAG 131 || |||||| | | ||||| ||||||||| | ||| ||||||||||||| ||||||| | Sbjct 336 GGTGGTAAACTCCATCTAAGGCTAAATAT-GACCACGAGACCGATAGCGAACAAGTACCG 394 Query 132 TGATCGAAAGATGAAA-AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAA 190 ||| ||||| ||||| || || || | |||||||| || || |||||||| ||| | Sbjct 395 TGAGGGAAAGTTGAAACAGAACCCTGTAGAGAGAGTTCAAGAGAACGTGAAACCGTTAAG 454 Query 191 AGG 193 ||| Sbjct 455 AGG 457 Score = 82.4 bits (90), Expect = 3e-13 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGG--GTGTC 462 || ||||||||| |||||||||||||||||| ||||| ||||||||| ||| | | Sbjct 921 CGACCCGTCTTGAAACACGGACCAAGGAGTCCAACATGTATGCGAGTCAATGGGCGCGCT 980 Query 463 AAACCCGTGCGCGTAATGAAAGTGAACGG 491 |||||| | ||| ||||||||||| ||| Sbjct 981 AAACCCACGGGCGCAATGAAAGTGATCGG 1009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079767503450