Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq288 244 2e-62 seq256 208 1e-51 >seq288 Length=13935 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 5904 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 5846 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 5845 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 5787 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 5786 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 5727 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 5726 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 5667 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 5666 ATCAATCTGTC 5656 >seq256 Length=33707 Score = 208 bits (230), Expect = 1e-51 Identities = 201/252 (80%), Gaps = 16/252 (6%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-CT 74 ||| |||||||||||||| |||| | ||||| ||||||||||||||||||||||||| || Sbjct 23751 TCATTGTAGCGCGCGTGCAGCCCCGGACATCGAAGGGCATCACAGACCTGTTATTGCTCT 23810 Query 75 CAAACTTCCATTGGCTGGAA---GCCAATAGTCCCTCTAAGAAGCCAGC--CACCAACCA 129 | | || | | || |||| |||||||||||||| | | ||| || | Sbjct 23811 TTTTCGTGCA--GCTTTCAATTTGCCA---GTCCCTCTAAGAAGTGATCAGCACAAA--A 23863 Query 130 TAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 || | || | ||||||| ||| || |||||||||||||||||||||||||||| Sbjct 23864 TATGCAATACTGTCACTATTTAATAGGGTAGAGTCTCGTTCGTTATCGGAATTAACCAGA 23923 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 23924 CAAATCGCTCCACCAACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGC 23983 Query 247 TATCAATCTGTC 258 | |||||||||| Sbjct 23984 TGTCAATCTGTC 23995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796716333759