Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq288 493 4e-137 seq400 286 1e-74 seq399 286 1e-74 seq256 286 1e-74 seq86 255 2e-65 >seq288 Length=13935 Score = 493 bits (546), Expect = 4e-137 Identities = 461/596 (77%), Gaps = 70/596 (12%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 12453 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 12394 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 12393 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTC 12334 Query 127 G-----GCCCGC--------GAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAA 166 | |||||| || |||| ||| |||||||| | |||| | Sbjct 12333 GCGCCCGCCCGCACGCGCGGGACGGACGCTTGGCGCCAGAAGCGAGAGCCCCTCGGGGCT 12274 Query 167 GACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC 226 || |||| ||| | | ||| |||||||||| || ||||||||||||||| || Sbjct 12273 CGCCCCC-CCGCCTCACCGGGTCAGTGAAAAAACGATGAGAGTAGTGGTATTTCACCGGC 12215 Query 227 G--------------------------CCGAA------ACGG-----------------C 237 | |||| |||| | Sbjct 12214 GGCCCGCGAGGCCGGCGTGCCCCGACCCCGACGCGAGGACGGGGCCGGGCGCCGGGGGCC 12155 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 ||||||||||||||||||||||| ||| ||||| | | ||||||||||||||||||| Sbjct 12154 TCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAAC 12095 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 12094 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGA 12035 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 12034 TAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGA 11975 Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 11974 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCAT 11915 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 11914 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 11859 >seq400 Length=4684 Score = 286 bits (316), Expect = 1e-74 Identities = 181/196 (92%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 2705 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 2646 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2645 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 2586 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 2585 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 2526 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 2525 ACGAGGCATTTGGCTA 2510 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 3081 TTTACTCTAGGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 3022 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 3021 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 2978 >seq399 Length=4684 Score = 286 bits (316), Expect = 1e-74 Identities = 181/196 (92%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 1980 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 2039 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2040 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 2099 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 2100 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 2159 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 2160 ACGAGGCATTTGGCTA 2175 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 1604 TTTACTCTAGGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 1663 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 1664 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 1707 >seq256 Length=33707 Score = 286 bits (316), Expect = 1e-74 Identities = 181/196 (92%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 31003 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 31062 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 31063 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 31122 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||| Sbjct 31123 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAATTAGATG 31182 Query 417 ACGAGGCATTTGGCTA 432 |||||||||||||||| Sbjct 31183 ACGAGGCATTTGGCTA 31198 Score = 259 bits (286), Expect = 2e-66 Identities = 175/196 (89%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| ||| ||| |||||| |||| |||||||||||||||||| Sbjct 9541 CTCCCACCTATGCTACACCTTTCATGTCTCTTCACAGAGTCAGACTAGAGTCAAGCTCAA 9600 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||| Sbjct 9601 CAGGGTCTTCTTTCCCTGCTGGTTTTGCCAAGCCCGTTCTCTTGGCTGTGGTTTCGCTAG 9660 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| |||||||||| ||||||||||| || ||| Sbjct 9661 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATCCATTCATACGCGTCACTAAATAAATG 9720 Query 417 ACGAGGCATTTGGCTA 432 || ||||||||||||| Sbjct 9721 ACTAGGCATTTGGCTA 9736 Score = 174 bits (192), Expect = 5e-41 Identities = 98/99 (99%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 18481 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTG 18540 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||| Sbjct 18541 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 18579 Score = 149 bits (164), Expect = 2e-33 Identities = 93/100 (93%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 7950 AAGAGAGTCATAGTTACTGCCGCCGTTTACCCGCGCTTGATTGAATTTCTTCACTTTGAC 8009 Query 497 ATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 |||||||||||||| |||||| ||||| || |||||| || Sbjct 8010 ATTCAGAGCACTGGACAGAAAACACATAGCATCAACACCA 8049 Score = 107 bits (118), Expect = 6e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 9 TTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGT 68 ||| ||||| ||| ||||||| ||| |||| |||||||||||||||||||| || Sbjct 30627 TTTACTCTAGGCGAGGTTTCTGTCCTCGCTGAGCTTACCTTAGGACACCTGCGTTATCGT 30686 Query 69 TTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 ||||||||||| ||||||||| |||||||||| |||||| ||| Sbjct 30687 TTAACAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACACTGT 30730 >seq86 Length=172892 Score = 255 bits (282), Expect = 2e-65 Identities = 174/196 (89%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| || ||| |||| | |||| |||||||||||||||||| Sbjct 96773 CTCCCACCTATGCTACACCTTTCGTGTCTCTTCAAAGAGTCAGACTAGAGTCAAGCTCAA 96832 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| |||||||||||| |||||| ||||||||||||||||||| |||||||||||||| Sbjct 96833 CAGGATCTTCTTTCCCCTCTGATTTTGCCAAGCCCGTTCCCTTGGTTGTGGTTTCGCTAG 96892 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| || ||||||| |||||||||||||||||| Sbjct 96893 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATGCATTCATACGCGTCACTAATTAGATG 96952 Query 417 ACGAGGCATTTGGCTA 432 || ||||||||||||| Sbjct 96953 ACTAGGCATTTGGCTA 96968 Score = 255 bits (282), Expect = 2e-65 Identities = 174/196 (89%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| ||| |||||||| || ||| |||| | |||| |||||||||||||||||| Sbjct 166973 CTCCCACCTATGCTACACCTTTCGTGTCTCTTCAAAGAGTCAGACTAGAGTCAAGCTCAA 167032 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||| |||||||||||| |||||| ||||||||||||||||||| |||||||||||||| Sbjct 167033 CAGGATCTTCTTTCCCCTCTGATTTTGCCAAGCCCGTTCCCTTGGTTGTGGTTTCGCTAG 167092 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||| ||||||| ||| || ||||||| |||||||||||||||||| Sbjct 167093 ATAGTAGATAGGGACAGAAGGAATCTTGTTGATGCATTCATACGCGTCACTAATTAGATG 167152 Query 417 ACGAGGCATTTGGCTA 432 || ||||||||||||| Sbjct 167153 ACTAGGCATTTGGCTA 167168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635022760672