Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq288 383 5e-104 seq256 372 9e-101 >seq288 Length=13935 Score = 383 bits (424), Expect = 5e-104 Identities = 420/558 (75%), Gaps = 59/558 (11%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 4932 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 4873 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4872 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 4813 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 4812 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 4753 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 || |||||||||||||||||||||||||| || ||||| | |||||| | | Sbjct 4752 GCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCAC 4693 Query 242 -AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA------------------- 279 || | |||||| | | ||||| || ||||||| Sbjct 4692 GGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGACCC 4633 Query 280 ------GGAGCCCCGAAGG--------GCGTTGGTTTTTTATCTAATAAATACACCCCTT 325 |||||| || || | ||||| |||| |||| |||||| ||| | | Sbjct 4632 CCGGCCGGAGCCGGGAGGGAGCTCACCGGGTTGG-TTTTGATCTGATAAATGCACGCATC 4574 Query 326 CC-------GAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACGG 371 || |||| ||||| | |||||||||||||||||||||||||| | Sbjct 4573 CCCCCCCGGGAAG-GGGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAG 4515 Query 372 TTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCATT 426 ||||||| |||| | || | | | |||| ||| |||||||||||||||||||||| Sbjct 4514 TTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCATT 4455 Query 427 CGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 ||||||||||||||| | | |||||||||||||||||||||||||||||||||| Sbjct 4454 CGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAA 4395 Query 487 GCATATGACTACTGGCAG 504 ||||||| |||||||||| Sbjct 4394 GCATATG-CTACTGGCAG 4378 >seq256 Length=33707 Score = 372 bits (412), Expect = 9e-101 Identities = 402/530 (76%), Gaps = 33/530 (6%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||| | || || | |||| ||| || || ||||| | |||||||||| Sbjct 24712 GTACTCATTTCGATAACGTTTCTCAAACGAGAATCGTCTCGTTATTTTTCGTCACTACCT 24771 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24772 CCCCAAGCTGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 24831 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 24832 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTGATTCTCCGTTACCCGTTATCACCATGGTA 24891 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 | | || ||||||||||| ||||||| |||||| | ||||| | ||||||| Sbjct 24892 GTCGCATAGACTACCATCGAAGGTTGATAAGGCAGACACTTGAAAGTGATGTCGCCGGTG 24951 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGAGCCCCGA---------- 289 | || ||||||||| | | ||||||| || ||||||| ||| ||| Sbjct 24952 CTAGACCATGCGATCAGAAATAGTTATTCAGATTCACCAAAGAGTTTCGACGTTCAGCAT 25011 Query 290 -------AGGGCGTT-GGTTTTTTATCTAATAAA-----TACACCCCTTCCGAAGTCGGG 336 | | |||| ||||||| ||||||||| | || || || | ||| | Sbjct 25012 CAGCCAGACGCCGTTCGGTTTTTGTTCTAATAAAAGCACTTCAACCATTTC--AGTTGAA 25069 Query 337 GTTTTT-AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA-GTAAGGTACTAT 394 |||||| || ||||||||||||||||||||||| |||||||||||| ||||| | Sbjct 25070 GTTTTTGTGCGTGTATTAGCTCTAGAATTACCACAGTTATCCATGTATGTAAG-----TT 25124 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 | ||||||| | ||| | ||||||||||||||| | |||||| | | | | | | Sbjct 25125 CTAATAAACTGTGGCTGTTGTAATGAGCCATTCGCGGCTTCACTTTTAAAACAGTGTGTG 25184 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25185 CTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 25234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510236287744