Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq41 163 2e-35 seq53 98.7 8e-16 >seq41 Length=297594 Score = 163 bits (180), Expect = 2e-35 Identities = 261/369 (71%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| || | || || | |||||| | || || |||| ||||| |||||||| | Sbjct 63778 TGGAACGATTTTCTCAAGAAATTCAAGTGACCGAAGCACGTTTCTTCTATGGCTTCCAAA 63719 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||| || || |||||||| || ||||||||||| | | || || || |||||| | | Sbjct 63718 TTGCTATAGAAAATGTCCATTCCGAGATGTACAGCTTGTTGATTGACACCTACATCCGTG 63659 Query 61376 AGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGA 61435 | | || ||| ||||| ||||||| || || || || || ||| |||||| | Sbjct 63658 ATCCGGTGGAGCGTGATTTTCTGTTCAACGCAATTGAAACAATTCCGTGTGTGAAGAAAA 63599 Query 61436 AAGCGGATTGGGCCTTCAATTGGATC----ACCAGTACAACGGCTACATTTGGTGAACGA 61491 |||| |||||||| || ||||||| ||| ||| | | ||| ||||| Sbjct 63598 AAGCAGATTGGGCTTTGCGTTGGATCGGTGACC--GCCAA--TCACCGTTTTCCGAACGT 63543 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTAT--TTTTCAGTGGATCGTTTGCCGCAATCT 61549 ||| | || || || | || || ||| | | ||||| | | | | || || |||| | Sbjct 63542 TTGGTCGCGTTCGCAGCTGTTGAAGGTATTTTCTTTTCCG-GCAGC-TTCGCGTCAATTT 63485 Query 61550 TTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCAC 61609 | |||||||| || || || || ||||||||| ||||||||||||| |||||||| || | Sbjct 63484 TCTGGTTGAAAAAGCGAGGCCTGATGCCCGGTTTGACCTTCAGCAACGAGTTGATCTCTC 63425 Query 61610 GCGACGAGG 61618 | ||||||| Sbjct 63424 GTGACGAGG 63416 >seq53 Length=248793 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| || || || | | |||| |||||| || | ||||||||| || || Sbjct 131810 TCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTT 131869 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || ||| | |||||||||||||| | ||||| ||||| || ||||| Sbjct 131870 TTCAGACCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAATTTAGCATAGTTGGGCTCA 131929 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || | || |||||||||||||| || || || || || | || ||||||||| Sbjct 131930 GCAATGTGAATATTCAACGACTGGGATTGGTCAATAAAAGCTCCCCTTTCGGCAGCCATG 131989 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 || |||| | | || || ||||| || |||||||||| ||||| |||| Sbjct 131990 TCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTCA 132046 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || ||||| | || | || | |||||| | || || |||||||| |||||||| || Sbjct 133299 TCGCCCCACAAATCCGCCAATCCTGGACATTCATGAGGGCACATCAGTGACCAATCTCCG 133358 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 || ||| | || ||| ||||||||||||||||| ||||| || || | ||| | Sbjct 133359 TCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAAAGGGCATAAAACAAATCTCTG 133418 Query 66383 GCTCGTTGCTCCTCAATG-CCGTGAT-TTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 |||| | || || ||| ||||| | |||| ||| ||| || || ||||| ||||| | Sbjct 133419 GCTCTGTTTTCTTCGATGCCCGTGTTCTTTTTCGC--GTCAAGAAAATCAAATATGTCTG 133476 Query 66441 CATGCCATGGTTCCA 66455 | ||||| ||||||| Sbjct 133477 CGTGCCAAGGTTCCA 133491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397515481142960