Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26]
1,683 sequences; 84,405,302 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq568 82.4 1e-13
>seq568
Length=2932
Score = 82.4 bits (90), Expect = 1e-13
Identities = 159/233 (68%), Gaps = 19/233 (8%)
Strand=Plus/Minus
Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGC---G 175
|| ||||||||| ||| | | ||| |||||||| |||| | || ||||| ||||| |
Sbjct 1897 GCAAGGTTAAGGACTTAAAGTCCGG-AGCCGAAGGGAAACCAAGTCTTAATAGGGCAGAG 1839
Query 176 ACGAG---TTGG-----------TGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAG 221
| || |||| | ||| |||| ||||||| |||||||||||| |
Sbjct 1838 CCAAGCAATTGGCAAAAGTCAGTTAACGC-AGACCCGAAACCGGGTGATCTACCCATGTC 1780
Query 222 CAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTT 281
|||| ||||| || |||| | |||||| |||||| | |||||||||| |
Sbjct 1779 CAGGATGAAGCTGCCGTAAAAGGCAGTGGAGGTCCGAACGCACATCCGTTGAAAAGGGTG 1720
Query 282 CGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
||||| | ||||||||| |||| |||||| ||| ||| |||||| ||
Sbjct 1719 GCGATGAGGTGTGGGTAGGGGAGAAATTCCAATCGAACCCGGAGATAGCTGGT 1667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972783627776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |