Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq568 82.4 1e-13 >seq568 Length=2932 Score = 82.4 bits (90), Expect = 1e-13 Identities = 159/233 (68%), Gaps = 19/233 (8%) Strand=Plus/Minus Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGC---G 175 || ||||||||| ||| | | ||| |||||||| |||| | || ||||| ||||| | Sbjct 1897 GCAAGGTTAAGGACTTAAAGTCCGG-AGCCGAAGGGAAACCAAGTCTTAATAGGGCAGAG 1839 Query 176 ACGAG---TTGG-----------TGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAG 221 | || |||| | ||| |||| ||||||| |||||||||||| | Sbjct 1838 CCAAGCAATTGGCAAAAGTCAGTTAACGC-AGACCCGAAACCGGGTGATCTACCCATGTC 1780 Query 222 CAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTT 281 |||| ||||| || |||| | |||||| |||||| | |||||||||| | Sbjct 1779 CAGGATGAAGCTGCCGTAAAAGGCAGTGGAGGTCCGAACGCACATCCGTTGAAAAGGGTG 1720 Query 282 CGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||| | ||||||||| |||| |||||| ||| ||| |||||| || Sbjct 1719 GCGATGAGGTGTGGGTAGGGGAGAAATTCCAATCGAACCCGGAGATAGCTGGT 1667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972783627776