Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq352 174 2e-41 seq233 168 1e-39 seq258 125 1e-26 seq54 80.6 4e-13 >seq352 Length=11155 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 6255 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 6312 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 6313 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 6372 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 6373 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 6432 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 6433 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 6485 >seq233 Length=75887 Score = 168 bits (186), Expect = 1e-39 Identities = 172/219 (79%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| | Sbjct 8929 GTACAAAGGGCAGGGACGTAGTCAACGCAAGCT-GATGACTCGCGCTTACTGGGAATT-C 8986 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| || || |||| |||| || |||| |||||| | |||||| |||| Sbjct 8987 CTCGTTCGAGGGAAATAATTTCAATTCCCTGTCCCAGTCACGAGAACGTTTCAACCGATT 9046 Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| | || | |||| | | | | || ||| | |||||||||| ||||||| Sbjct 9047 TCCCGACCTTGACAGGCCGGGCTTGAACGCACGCTGACGCCGTCAGTGTAGCACGCGTGC 9106 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 9107 AGCCCCGTACATCTAAGGGCATCACAGACCTGTTATTGC 9145 Score = 168 bits (186), Expect = 1e-39 Identities = 172/219 (79%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| | Sbjct 42607 GTACAAAGGGCAGGGACGTAGTCAACGCAAGCT-GATGACTCGCGCTTACTGGGAATT-C 42664 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| || || |||| |||| || |||| |||||| | |||||| |||| Sbjct 42665 CTCGTTCGAGGGAAATAATTTCAATTCCCTGTCCCAGTCACGAGAACGTTTCAACCGATT 42724 Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| | || | |||| | | | | || ||| | |||||||||| ||||||| Sbjct 42725 TCCCGACCTTGGCAGGCCGGGCTTGAACGCACGCTGACGCCGTCAGTGTAGCACGCGTGC 42784 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 42785 AGCCCCGTACATCTAAGGGCATCACAGACCTGTTATTGC 42823 Score = 156 bits (172), Expect = 6e-36 Identities = 170/220 (77%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||| | Sbjct 14861 GTACAAAGGGCAGGGACGTAGTCAACGCAAGCT-GATGACTCGCGCTTACTGGGAATT-C 14918 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| || || |||| |||| || |||| |||||| | |||||| |||| Sbjct 14919 CTCGTTCGAGGGAAATAATTTCAATTCCCTGTCCCAGTCACGAGAACGTTTCAACCGATT 14978 Query 120 ACCCGGACCT--GTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 | ||||| | |||| | | | | || ||| | |||||||||| |||||| Sbjct 14979 TGC--GACCTTGGCAGGCCGGGCTTGAACGCACGCTGACGCCGTCAGTGTAGCACGCGTG 15036 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | |||| | ||||||||||||||||||| ||||||||||| Sbjct 15037 CAGCCCCGTACATCTAAGGGCATCACAGTCCTGTTATTGC 15076 >seq258 Length=66481 Score = 125 bits (138), Expect = 1e-26 Identities = 163/219 (74%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| ||||||||||| ||| ||| |||||||||||||| |||| ||| Sbjct 33487 GTACAAAGGGCAGGGATGTAGTCAACGCAAGC-TGACGACTCGCGCTTACTGGGAA-TTC 33544 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||| || ||| ||||||| |||| | |||| ||||| | |||||| |||| Sbjct 33545 CTCGATGGAGAGAAACAATTTCAATTCCCAGTCCCAGACACGAGAACGTTTCAACCGATT 33604 Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| | |||| |||| | | | || | ||| | ||||||||| ||||||| Sbjct 33605 TCCCGACCTTGTCAGGCCGGGCTTGAACACAAGCTGACGCCGTCAGTGTAGGACGCGTGC 33664 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 | || | ||||| ||| ||| |||| ||| ||||||| Sbjct 33665 AG-CCTGTACATCCAAGCGCAACACACACCACTTATTGC 33702 >seq54 Length=432441 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||||||||| ||| ||| |||| | ||||||||||||||||||||||||||||||| Sbjct 298437 TCAGTGTAGCACGCATGCAGCCCCGTACATCTAAGGGCATCACAGACCTGTTATTGC 298493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751987739345