Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq352 104 1e-20 seq233 98.7 6e-19 >seq352 Length=11155 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 6789 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 6848 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | ||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 6849 CATCGCCAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 6905 >seq233 Length=75887 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||| ||| |||||| |||| || ||| ||| ||||||||| || | ||| ||||| Sbjct 15461 GAACCGAAAAACTTTGGTTTCCCGGAAGCTGCTCAGCGAGTCATAAAAAGAACGTCGCCG 15520 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||||||| | |||| | ||||||||||||| |||||| Sbjct 15521 AATCGCTGGTTGGCATCGTTTACGGTCACAACTAGGGCGGTATCTGATCGCCTTCGA 15577 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||| ||| |||||| |||| || ||| ||| ||||||||| || | ||| ||||| Sbjct 43208 GAACCGAAAAACTTTGGTTTCCCGGAAGCTGCTCAGCGAGTCATAAAAAGAACGTCGCCG 43267 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||||||| | |||| | ||||||||||||| |||||| Sbjct 43268 AATCGCTGGTTGGCATCGTTTACGGTCACAACTAGGGCGGTATCTGATCGCCTTCGA 43324 Score = 95.1 bits (104), Expect = 7e-18 Identities = 92/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||| ||| |||||| |||| || ||| ||| ||||||||| || | ||| ||||| Sbjct 9530 GAACCGAAA-ACTTTGGTTTCCCGGAAGCTGCTCAGCGAGTCATAAAAAGAACGTCGCCG 9588 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || || ||||| ||||||||| | |||| | ||||||||||||| |||||| Sbjct 9589 AATCGCTGGTTGGCATCGTTTACGGTCACAACTAGGGCGGTATCTGATCGCCTTCGA 9645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278395607370