Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26]
1,683 sequences; 84,405,302 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq352 165 1e-38
seq233 138 2e-30
seq22 77.0 6e-12
>seq352
Length=11155
Score = 165 bits (182), Expect = 1e-38
Identities = 207/278 (74%), Gaps = 7/278 (3%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | |||||||||||||| |||||||||
Sbjct 7187 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAA-TTAGAGTGT 7129
Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| ||| |||||||| ||||||||| ||||
Sbjct 7128 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 7070
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||||||||||||| | || | | |||||||| ||||| | |||||| |
Sbjct 7069 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 7010
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| | |||||||||||||||||| ||||| || | ||||||||
Sbjct 7009 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 6950
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| ||||| |||||||||||||||| ||||||||||
Sbjct 6949 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 6913
>seq233
Length=75887
Score = 138 bits (152), Expect = 2e-30
Identities = 181/247 (73%), Gaps = 4/247 (2%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCATG 131
|||||||||| ||||| || | |||| ||||||| | |||| ||| | |||||
Sbjct 9891 TTTACTTTGAGAAAATGGAAGCGCTCAAGGCAGGCCGTAGTGCTTGAACAGTGGTGCATG 9832
Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191
||||||| || | | | | |||| ||||||||||||||| | || | |||||||
Sbjct 9831 GAATAATGAAAGATGGCCT-CGGTGCTATTTTGTTGGTTTACGGTGACGAGGCAATGATT 9773
Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251
|| || || || ||||| | ||||| || |||||||||||||||||||
Sbjct 9772 AAAAGAGACAGACGGGGACATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGCAG 9713
Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311
||||| ||| | ||||||||| || |||| |||||||||||||||| |||||||||
Sbjct 9712 CAAGACGAACAATTGCGAAAGCATTTGTCAAGAATGTTTTCATTAATCA-AGAACGAAAG 9654
Query 312 TTAGGGG 318
|||| ||
Sbjct 9653 TTAGAGG 9647
Score = 138 bits (152), Expect = 2e-30
Identities = 181/247 (73%), Gaps = 4/247 (2%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCATG 131
|||||||||| ||||| || | |||| ||||||| | |||| ||| | |||||
Sbjct 15823 TTTACTTTGAGAAAATGGAAGCGCTCAAGGCAGGCCGTAGTGCTTGAACAGTGGTGCATG 15764
Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191
||||||| || | | | | |||| ||||||||||||||| | || | |||||||
Sbjct 15763 GAATAATGAAAGATGGCCT-CGGTGCTATTTTGTTGGTTTACGGTGACGAGGCAATGATT 15705
Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251
|| || || || ||||| | ||||| || |||||||||||||||||||
Sbjct 15704 AAAAGAGACAGACGGGGACATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGCAG 15645
Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311
||||| ||| | ||||||||| || |||| |||||||||||||||| |||||||||
Sbjct 15644 CAAGACGAACAATTGCGAAAGCATTTGTCAAGAATGTTTTCATTAATCA-AGAACGAAAG 15586
Query 312 TTAGGGG 318
|||| ||
Sbjct 15585 TTAGAGG 15579
Score = 138 bits (152), Expect = 2e-30
Identities = 181/247 (73%), Gaps = 4/247 (2%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCATG 131
|||||||||| ||||| || | |||| ||||||| | |||| ||| | |||||
Sbjct 43570 TTTACTTTGAGAAAATGGAAGCGCTCAAGGCAGGCCGTAGTGCTTGAACAGTGGTGCATG 43511
Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191
||||||| || | | | | |||| ||||||||||||||| | || | |||||||
Sbjct 43510 GAATAATGAAAGATGGCCT-CGGTGCTATTTTGTTGGTTTACGGTGACGAGGCAATGATT 43452
Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251
|| || || || ||||| | ||||| || |||||||||||||||||||
Sbjct 43451 AAAAGAGACAGACGGGGACATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGCAG 43392
Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311
||||| ||| | ||||||||| || |||| |||||||||||||||| |||||||||
Sbjct 43391 CAAGACGAACAATTGCGAAAGCATTTGTCAAGAATGTTTTCATTAATCA-AGAACGAAAG 43333
Query 312 TTAGGGG 318
|||| ||
Sbjct 43332 TTAGAGG 43326
>seq22
Length=772282
Score = 77.0 bits (84), Expect = 6e-12
Identities = 71/89 (80%), Gaps = 1/89 (1%)
Strand=Plus/Minus
Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284
|| ||||||||||||||||||| ||||| ||| | ||||||||| || ||||
Sbjct 328494 GTTAGAGGTGAAATTCTTGGATCGCAGCAAGACGAACAATTGCGAAAGCATTTGTCAAGA 328435
Query 285 ATGTTTTCATTAATCAGTGAACGAAAGTT 313
|||||||||||||||| ||| |||||||
Sbjct 328434 ATGTTTTCATTAATCA-AGAATGAAAGTT 328407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915184597184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |