Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq352 165 1e-38 seq233 138 2e-30 seq22 77.0 6e-12 >seq352 Length=11155 Score = 165 bits (182), Expect = 1e-38 Identities = 207/278 (74%), Gaps = 7/278 (3%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||| ||||||||| Sbjct 7187 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAA-TTAGAGTGT 7129 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 7128 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 7070 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 7069 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 7010 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 7009 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 6950 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 6949 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 6913 >seq233 Length=75887 Score = 138 bits (152), Expect = 2e-30 Identities = 181/247 (73%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCATG 131 |||||||||| ||||| || | |||| ||||||| | |||| ||| | ||||| Sbjct 9891 TTTACTTTGAGAAAATGGAAGCGCTCAAGGCAGGCCGTAGTGCTTGAACAGTGGTGCATG 9832 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||| || | | | | |||| ||||||||||||||| | || | ||||||| Sbjct 9831 GAATAATGAAAGATGGCCT-CGGTGCTATTTTGTTGGTTTACGGTGACGAGGCAATGATT 9773 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || || || || ||||| | ||||| || ||||||||||||||||||| Sbjct 9772 AAAAGAGACAGACGGGGACATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGCAG 9713 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| ||| | ||||||||| || |||| |||||||||||||||| ||||||||| Sbjct 9712 CAAGACGAACAATTGCGAAAGCATTTGTCAAGAATGTTTTCATTAATCA-AGAACGAAAG 9654 Query 312 TTAGGGG 318 |||| || Sbjct 9653 TTAGAGG 9647 Score = 138 bits (152), Expect = 2e-30 Identities = 181/247 (73%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCATG 131 |||||||||| ||||| || | |||| ||||||| | |||| ||| | ||||| Sbjct 15823 TTTACTTTGAGAAAATGGAAGCGCTCAAGGCAGGCCGTAGTGCTTGAACAGTGGTGCATG 15764 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||| || | | | | |||| ||||||||||||||| | || | ||||||| Sbjct 15763 GAATAATGAAAGATGGCCT-CGGTGCTATTTTGTTGGTTTACGGTGACGAGGCAATGATT 15705 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || || || || ||||| | ||||| || ||||||||||||||||||| Sbjct 15704 AAAAGAGACAGACGGGGACATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGCAG 15645 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| ||| | ||||||||| || |||| |||||||||||||||| ||||||||| Sbjct 15644 CAAGACGAACAATTGCGAAAGCATTTGTCAAGAATGTTTTCATTAATCA-AGAACGAAAG 15586 Query 312 TTAGGGG 318 |||| || Sbjct 15585 TTAGAGG 15579 Score = 138 bits (152), Expect = 2e-30 Identities = 181/247 (73%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT--TGCTCGAATACATTAGCATG 131 |||||||||| ||||| || | |||| ||||||| | |||| ||| | ||||| Sbjct 43570 TTTACTTTGAGAAAATGGAAGCGCTCAAGGCAGGCCGTAGTGCTTGAACAGTGGTGCATG 43511 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||| || | | | | |||| ||||||||||||||| | || | ||||||| Sbjct 43510 GAATAATGAAAGATGGCCT-CGGTGCTATTTTGTTGGTTTACGGTGACGAGGCAATGATT 43452 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || || || || ||||| | ||||| || ||||||||||||||||||| Sbjct 43451 AAAAGAGACAGACGGGGACATTCGTATTGCTGCGTTAGAGGTGAAATTCTTGGATCGCAG 43392 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| ||| | ||||||||| || |||| |||||||||||||||| ||||||||| Sbjct 43391 CAAGACGAACAATTGCGAAAGCATTTGTCAAGAATGTTTTCATTAATCA-AGAACGAAAG 43333 Query 312 TTAGGGG 318 |||| || Sbjct 43332 TTAGAGG 43326 >seq22 Length=772282 Score = 77.0 bits (84), Expect = 6e-12 Identities = 71/89 (80%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 || ||||||||||||||||||| ||||| ||| | ||||||||| || |||| Sbjct 328494 GTTAGAGGTGAAATTCTTGGATCGCAGCAAGACGAACAATTGCGAAAGCATTTGTCAAGA 328435 Query 285 ATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||||||||||||||| ||| ||||||| Sbjct 328434 ATGTTTTCATTAATCA-AGAATGAAAGTT 328407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915184597184