Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq352 149 3e-33 seq233 125 3e-26 >seq352 Length=11155 Score = 149 bits (164), Expect = 3e-33 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||| |||||||||||||||||||||||||||| |||| |||| Sbjct 2461 GAGCACGAGCGTACGCGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 2402 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 2401 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 2342 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 2341 TGGGTATAGGGGCGA 2327 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 3551 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 3492 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 3491 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 3432 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 3431 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 3392 >seq233 Length=75887 Score = 125 bits (138), Expect = 3e-26 Identities = 102/123 (83%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 561 AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACT 620 ||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||| Sbjct 6498 AGCTGTT---ACCCGAAAGATGGTGAACTATGCATGAGCAGGATGAAGCCAGAGGAAACT 6442 Query 621 CTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 |||||||| | ||| |||||| || |||||||||| ||| | | ||| | ||||||| Sbjct 6441 CTGGTGGAAGTTCGTAGCGGTGTTGACGTGCAAATCACTCGCCCGACTTGTGCATAGGGG 6382 Query 681 CGA 683 ||| Sbjct 6381 CGA 6379 Score = 111 bits (122), Expect = 7e-22 Identities = 113/145 (78%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||| | | || |||||| | || ||| ||||||| | ||||||||||| Sbjct 7504 CGAGTCGGGTTGCTCGAGAGTGCAGCCCAAAGCGGGTGGTAAATCCCACCTAAAGCTAAA 7445 Query 99 TATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 || | | | ||||||||||||| ||||||| | || ||||| ||||||| |||||| Sbjct 7444 TAC-GACTACGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGAACTTTGA 7386 Query 158 AAAGAGAGTTAAAAAGCACGTGAAA 182 | |||||||| || || |||||||| Sbjct 7385 AGAGAGAGTTCAACAGGACGTGAAA 7361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079963899650