Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq568 179 5e-43 >seq568 Length=2932 Score = 179 bits (198), Expect = 5e-43 Identities = 189/249 (76%), Gaps = 25/249 (10%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| || ||||| || ||| | || |||||| Sbjct 662 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCATATACTTCACCTTTCGGT-TTCGCAT 720 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||| |||| || ||||||||| || | Sbjct 721 AGACCTGTGTTTTTGCTAAACAGTTGCTTGAGCCTTTTCTCTGCGGCCTC---------- 770 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| | || ||||||||||||||| ||||||||||||||||||||||| Sbjct 771 --------TTCTC----AGAGGCACCCCTTCTCCCTAAGTTACGGGGCCATTTTGCCGAG 818 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGA-CCACCTGTGTCGG 239 ||||||||| | ||| |||| ||||||| ||||||| ||| | ||||||||||||| Sbjct 819 TTCCTTAACAATGCTTCTCCCGCCGGCCTTAGGATTCTCT-CCTCATCCACCTGTGTCGG 877 Query 240 TTTACGGTA 248 ||||||||| Sbjct 878 TTTACGGTA 886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694388678459