Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26]
1,683 sequences; 84,405,302 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq568 179 5e-43
>seq568
Length=2932
Score = 179 bits (198), Expect = 5e-43
Identities = 189/249 (76%), Gaps = 25/249 (10%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| ||||||| ||||||||||||||||| || ||||| || ||| | || ||||||
Sbjct 662 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCATATACTTCACCTTTCGGT-TTCGCAT 720
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
||||||||||||| |||||||| |||| || ||||||||| || |
Sbjct 721 AGACCTGTGTTTTTGCTAAACAGTTGCTTGAGCCTTTTCTCTGCGGCCTC---------- 770
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
||| | || ||||||||||||||| |||||||||||||||||||||||
Sbjct 771 --------TTCTC----AGAGGCACCCCTTCTCCCTAAGTTACGGGGCCATTTTGCCGAG 818
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGA-CCACCTGTGTCGG 239
||||||||| | ||| |||| ||||||| ||||||| ||| | |||||||||||||
Sbjct 819 TTCCTTAACAATGCTTCTCCCGCCGGCCTTAGGATTCTCT-CCTCATCCACCTGTGTCGG 877
Query 240 TTTACGGTA 248
|||||||||
Sbjct 878 TTTACGGTA 886
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694388678459
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |