Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq568 109 6e-22 >seq568 Length=2932 Score = 109 bits (120), Expect = 6e-22 Identities = 130/175 (74%), Gaps = 5/175 (3%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| || | | | || || ||||||| | | ||| || |||| Sbjct 883 CGTAAACCGACACAGGTGGATGAGGAGAGAATCCTAAGGCCGGCGGGAGAAGCATTGTTA 824 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| || ||| ||||||| |||| || |||| ||| | |||| || Sbjct 823 AGGAACTCGGCAAAATGGCCCCGTAACTTAGGGAGAAGGGGTGCCT-CTGAGAA----GA 769 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||||||| ||| || ||||||||||| |||||||||||| || ||| || Sbjct 768 GGCCGCAGAGAAAAGGCTCAAGCAACTGTTTAGCAAAAACACAGGTCTATGCGAA 714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531191339282