Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq568 250 6e-64 >seq568 Length=2932 Score = 250 bits (276), Expect = 6e-64 Identities = 301/414 (73%), Gaps = 28/414 (7%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||||||||| | | || |||||||||| ||| || Sbjct 483 GCATCTTCACTGGCACTTCAATTTCACCGGGGGCATTGTTGAGACAGCGCTCAAATCATT 542 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 602 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | ||||||||||||||||||||||||||| || | ||||| |||| || || | | Sbjct 603 TAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAAAGCTT--CGTTTCCTGACTTCTCC 660 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||||||||| ||||||||||||||||| || ||||| || |||||| || ||| Sbjct 661 TCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCATATACTTCACCTTTCGGTTTCGCAT 720 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || |||||||||| |||||||| || |||| | ||| || || ||| Sbjct 721 AGACCTGTGTTTTTGCTAAACAGTTGCTTGAGCCTTTTCTCTGCGGCC-------TCTT- 772 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 |||| ||| | ||||||||| ||||||||| ||| |||||| Sbjct 773 ------------------CTCAGAGGCACCCCTTCTCCCTAAGTTACGGGGCCATTTTGC 814 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | |||||||| | ||||| | ||||| | ||||||| | || |||| Sbjct 815 CGAGTTCCTTAACAATGCTTCTCCCGCCGGCCTTAGGATTCTCTCCTCATCCAC 868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260778780736