Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq568 421 1e-115 >seq568 Length=2932 Score = 421 bits (466), Expect = 1e-115 Identities = 313/364 (86%), Gaps = 3/364 (1%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || || |||||||||| || | | ||||||||||| | ||||||||||||| || ||| Sbjct 477 TAGCCAGCATCTTCACTGGCACTTCAATTTCACCGGGGGCATTGTTGAGACAGCGCTCAA 536 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 ATCATTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 596 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||||||||||||||||||||||||| ||||||| | |||| |||||| || || || Sbjct 597 CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAAAGCTTCGTTT--CCTGAC 654 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 ||| ||||||||||||||||||||||||||||||| | ||||| || ||| || | Sbjct 655 TTCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCATATACTTCACCTTTCGGTT 714 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300 | ||| | ||||||||||||| |||||||| ||||| |||| ||||||||||||| | | Sbjct 715 TCGCATAGACCTGTGTTTTTGCTAAACAGTTGCTTGAGCCTTTTCTCTGCGGCCTCTTCT 774 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGT 360 | |||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 775 -CAGAGGCACCCCTTCTCCCTAAGTTACGGGGCCATTTTGCCGAGTTCCTTAACAATGCT 833 Query 361 TCTC 364 |||| Sbjct 834 TCTC 837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062382119808