Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq352 244 2e-62 seq233 150 3e-34 seq54 102 1e-19 >seq352 Length=11155 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 6413 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 6471 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 6472 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 6530 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 6531 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 6590 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 6591 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 6650 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 6651 ATCAATCTGTC 6661 >seq233 Length=75887 Score = 150 bits (166), Expect = 3e-34 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||| ||| | |||||||||||||||||||||| ||||||||||| ||||||| Sbjct 15216 GCTAGTTAGTAGGCCAGAGTCTCGTTCGTTATCGGAATTAGCCAGACAAATCGCTCCACC 15275 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||| Sbjct 15276 AACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTCTTGATCTGTC 15333 Score = 150 bits (166), Expect = 3e-34 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||| ||| | |||||||||||||||||||||| ||||||||||| ||||||| Sbjct 42963 GCTAGTTAGTAGGCCAGAGTCTCGTTCGTTATCGGAATTAGCCAGACAAATCGCTCCACC 43022 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||| Sbjct 43023 AACTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTCTTGATCTGTC 43080 Score = 145 bits (160), Expect = 1e-32 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||| ||| | |||||||||||||||||||||| ||||||||||| ||||||| Sbjct 9285 GCTAGTTAGTAGGCCAGAGTCTCGTTCGTTATCGGAATTAGCCAGACAAATCGCTCCACC 9344 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||||||||||||||||||||| ||||| |||||||||||||||| | ||||||| Sbjct 9345 AGCTAAGAACGGCCATGCACCACTACCCACTGAATCAAGAAAGAGCTCTTGATCTGTC 9402 Score = 91.5 bits (100), Expect = 2e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 5 CGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 64 || || | ||||||||||||| ||||||| |||| | ||||||||||||||||||||||| Sbjct 9078 CGCTGACGCCGTCAGTGTAGCACGCGTGCAGCCCCGTACATCTAAGGGCATCACAGACCT 9137 Query 65 GTTATTGC 72 |||||||| Sbjct 9138 GTTATTGC 9145 Score = 91.5 bits (100), Expect = 2e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 5 CGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 64 || || | ||||||||||||| ||||||| |||| | ||||||||||||||||||||||| Sbjct 42756 CGCTGACGCCGTCAGTGTAGCACGCGTGCAGCCCCGTACATCTAAGGGCATCACAGACCT 42815 Query 65 GTTATTGC 72 |||||||| Sbjct 42816 GTTATTGC 42823 Score = 87.8 bits (96), Expect = 3e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 5 CGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCT 64 || || | ||||||||||||| ||||||| |||| | ||||||||||||||||||| ||| Sbjct 15009 CGCTGACGCCGTCAGTGTAGCACGCGTGCAGCCCCGTACATCTAAGGGCATCACAGTCCT 15068 Query 65 GTTATTGC 72 |||||||| Sbjct 15069 GTTATTGC 15076 >seq54 Length=432441 Score = 102 bits (112), Expect = 1e-19 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||| ||| |||||||||||||||||||||| ||||||||||| ||||||| Sbjct 298633 GCTAGTTAGTAGGCCTGAGTCTCGTTCGTTATCGGAATTAGCCAGACAAATCGCTCCACC 298692 Query 201 AACTAAGAACGGCCATGCA 219 ||||||||||||||||||| Sbjct 298693 AACTAAGAACGGCCATGCA 298711 Score = 86.0 bits (94), Expect = 1e-14 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||||||||||||| ||| ||| |||| | ||||||||||||||||||||||||||||||| Sbjct 298434 CCGTCAGTGTAGCACGCATGCAGCCCCGTACATCTAAGGGCATCACAGACCTGTTATTGC 298493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796787008923