Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq233 372 5e-101 seq143 372 5e-101 seq352 347 2e-93 seq82 340 3e-91 seq221 338 1e-90 seq465 311 1e-82 seq35 73.4 7e-11 >seq233 Length=75887 Score = 372 bits (412), Expect = 5e-101 Identities = 261/295 (88%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGA-CGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | ||| | || ||||||||||||||||||||||||||| Sbjct 29141 TACTGAGCAGGATTACTATTGCGACGATCAGTAATCAGTAGGGTAAAACTAACCTGTCTC 29200 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 29201 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 29260 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29261 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 29320 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 29321 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCA 29380 Query 240 TCAAAT-TTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| | | | |||||||||||||||||| ||||| ||| | ||||| Sbjct 29381 TGAAATCCGCAAAAATCAAAAGGATCGATAGGCCACGCTTTCGCGGTCTCTATTC 29435 Score = 372 bits (412), Expect = 5e-101 Identities = 261/295 (88%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGA-CGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | ||| | || ||||||||||||||||||||||||||| Sbjct 59653 TACTGAGCAGGATTACTATTGCGACGATCAGTAATCAGTAGGGTAAAACTAACCTGTCTC 59712 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 59713 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 59772 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59773 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 59832 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 59833 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCA 59892 Query 240 TCAAAT-TTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| | | | |||||||||||||||||| ||||| ||| | ||||| Sbjct 59893 TGAAATCCGCAAAAATCAAAAGGATCGATAGGCCACGCTTTCGCGGTCTCTATTC 59947 >seq143 Length=170708 Score = 372 bits (412), Expect = 5e-101 Identities = 261/295 (88%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGA-CGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | ||| | || ||||||||||||||||||||||||||| Sbjct 157603 TACTGAGCAGGATTACTATTGCGACGATCAGTAATCAGTAGGGTAAAACTAACCTGTCTC 157544 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 157543 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 157484 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157483 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 157424 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 157423 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCA 157364 Query 240 TCAAAT-TTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| | | | |||||||||||||||||| ||||| ||| | ||||| Sbjct 157363 TGAAATCCGCAAAAATCAAAAGGATCGATAGGCCACGCTTTCGCGGTCTCTATTC 157309 >seq352 Length=11155 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 540 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 599 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 600 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 659 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 660 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 719 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 720 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 779 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 780 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 833 >seq82 Length=326422 Score = 340 bits (376), Expect = 3e-91 Identities = 216/233 (93%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGA-CGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | ||| | || ||||||||||||||||||||||||||| Sbjct 312302 TACTGAGCAGGATTACTATTGCGACGATCAGTAATCAGTAGGGTAAAACTAACCTGTCTC 312361 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 312362 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 312421 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 312422 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 312481 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 || ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 312482 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACC 312534 >seq221 Length=82606 Score = 338 bits (374), Expect = 1e-90 Identities = 255/296 (86%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGA-CGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| | || | ||| | || ||||||||||||||||||||||||||| Sbjct 41982 TACTGAGCAGGATTACTAATGCGACGATCAGTAATCAGTAGGGTAAAACTAACCTGTCTC 41923 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 41922 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 41863 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA-GCAACGTCGCT 178 |||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 41862 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGGCAATGTCGCT 41803 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 41802 ATGGACGCTTGTTTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGC 41743 Query 239 CTCAAAT-TTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| | | | ||||||||||| | |||| ||||| ||| | ||||| Sbjct 41742 ATGAAATCCGCAAAAATCAAAAGGATCGATGGACCACGCTTTCGCGGTCTCTATTC 41687 Score = 327 bits (362), Expect = 2e-87 Identities = 252/295 (85%), Gaps = 3/295 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGA-CGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| | || | ||| | || ||||||||||||||||||||||||||| Sbjct 11049 TACTGAGCAGGATTACTAATGCGACGATCAGTAATCAGTAGGGTAAAACTAACCTGTCTC 10990 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||| |||| ||||||||||||||||||||| | Sbjct 10989 ACGACGGTCTAAACCCAGCTCACGTTCC-TATTGGTGGGTGAACAATCCAACGCTCGGGG 10931 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| ||||||||||||||||| |||| | |||||||| |||||||||||| Sbjct 10930 AATTCTGCTTCGCAATGATAGGAAGAGCCGAAATCGGACGATCAAAACGCAACGTCGCTA 10871 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || Sbjct 10870 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACATCTTGCA 10811 Query 240 TCAAATTTCGAGGGA-CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| | | | |||||||||||||||||| ||||| ||| | ||||| Sbjct 10810 TGAAATCCGTAAAAATCAAAAGGATCGATAGGCCACGCTTTCGCGGTCTCTATTC 10756 >seq465 Length=4563 Score = 311 bits (344), Expect = 1e-82 Identities = 198/214 (93%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 15 ACCATTGGGGCGA-CGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAAC 73 || |||| | ||| | || |||||||||||||||||||||||||| | |||||||||||| Sbjct 1214 ACTATTGCGACGATCAGTAATCAGTAGGGTAAAACTAACCTGTCTTACGACGGTCTAAAC 1273 Query 74 CCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGT 133 ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| Sbjct 1274 CCAGCTCACGTTCCCTATTGGTGGGTGAACGATCCAACGCTTGGCGAATTCTGCTTCGCA 1333 Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 1334 ATGATAGGAAGAGCCGACATCGTAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTG 1393 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 |||||||||||||||||||||||||||||||||| Sbjct 1394 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 1427 >seq35 Length=533676 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCA-TCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | ||| ||| ||||||||| |||||||||||||||| Sbjct 232198 TACTGAGCAGGATTACTATTGCGACGATCATCAATCAGTAGGGAAAAACTAACCTGTCTC 232257 Query 60 ATGACGGTCTAA 71 | |||||||||| Sbjct 232258 ACGACGGTCTAA 232269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854385620448