Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26]
1,683 sequences; 84,405,302 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq568 264 2e-68
>seq568
Length=2932
Score = 264 bits (292), Expect = 2e-68
Identities = 260/330 (79%), Gaps = 7/330 (2%)
Strand=Plus/Minus
Query 13 GAGGCAAAGAGATGGATACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTT 72
||||||||||||| |||||||| |||||||| ||||||||||| |||| |
Sbjct 394 GAGGCAAAGAGATATGAACGCCAGTTCATAAGGAGCCAATGTTGGGATACCACCCTTTGA 335
Query 73 GTATTGGATTTCTAACCGGACGAC-GTATAACCGTTGACGGG--ACAGTGTCAGTCGGGC 129
||| ||| ||||||||| ||| | ||| | ||| |||||| ||| |||| | ||||
Sbjct 334 GTACTGGGTTTCTAACCT-ACGTCCGTA-AGCCG--GACGGGGGACAATGTCTGACGGGG 279
Query 130 AGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGC 189
|||||||||||||||||||||||| |||| ||| ||||||||| ||||| | |||||||
Sbjct 278 AGTTTGACTGGGGCGGTCGCCTCCGAAAGGGTATCGGAGGCGCTCAAAGGTTCCCTCAGA 219
Query 190 TTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCA 249
|||| ||||||||| || |||||||||||| ||||| | |||||| |||||| |
Sbjct 218 ATGGACGGAAACCATTCGAGGAGTGCAAAGGCAGAAGGGAGCCTGACTGTGACACCGACG 159
Query 250 AGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTC 309
|| | |||| |||||||| || |||| |||||||| ||| | ||| || ||| ||
Sbjct 158 GGTGGAACAGGTACGAAAGTAGGACTTAGTGATCCGGTGGTAAGAAGTGGGACAGCCATC 99
Query 310 GCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||| |||||||||||||||||||||||||
Sbjct 98 GCTCAACGGATAAAAGCTACCCTGGGGATA 69
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982383466208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |