Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq568 264 2e-68 >seq568 Length=2932 Score = 264 bits (292), Expect = 2e-68 Identities = 260/330 (79%), Gaps = 7/330 (2%) Strand=Plus/Minus Query 13 GAGGCAAAGAGATGGATACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTT 72 ||||||||||||| |||||||| |||||||| ||||||||||| |||| | Sbjct 394 GAGGCAAAGAGATATGAACGCCAGTTCATAAGGAGCCAATGTTGGGATACCACCCTTTGA 335 Query 73 GTATTGGATTTCTAACCGGACGAC-GTATAACCGTTGACGGG--ACAGTGTCAGTCGGGC 129 ||| ||| ||||||||| ||| | ||| | ||| |||||| ||| |||| | |||| Sbjct 334 GTACTGGGTTTCTAACCT-ACGTCCGTA-AGCCG--GACGGGGGACAATGTCTGACGGGG 279 Query 130 AGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGC 189 |||||||||||||||||||||||| |||| ||| ||||||||| ||||| | ||||||| Sbjct 278 AGTTTGACTGGGGCGGTCGCCTCCGAAAGGGTATCGGAGGCGCTCAAAGGTTCCCTCAGA 219 Query 190 TTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCA 249 |||| ||||||||| || |||||||||||| ||||| | |||||| |||||| | Sbjct 218 ATGGACGGAAACCATTCGAGGAGTGCAAAGGCAGAAGGGAGCCTGACTGTGACACCGACG 159 Query 250 AGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTC 309 || | |||| |||||||| || |||| |||||||| ||| | ||| || ||| || Sbjct 158 GGTGGAACAGGTACGAAAGTAGGACTTAGTGATCCGGTGGTAAGAAGTGGGACAGCCATC 99 Query 310 GCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| ||||||||||||||||||||||||| Sbjct 98 GCTCAACGGATAAAAGCTACCCTGGGGATA 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982383466208