Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq568 132 5e-29 >seq568 Length=2932 Score = 132 bits (146), Expect = 5e-29 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| ||||| ||| |||| | |||||||||| | ||| ||||||||| | Sbjct 453 GGGGTCTTTCCGTCCTGGCGCAGGTAGCCAGCATCTTCACTGGCACTTCAATTTCACCGG 512 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | || |||||||||| ||| || ||||||| |||||||||||||||| Sbjct 513 GGGCATTGTTGAGACAGCGCTCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTACCCG 572 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 573 ACAAGGAATTTCGCTACCTTAGGACCGTTA 602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547191078417