Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq568 217 5e-54 >seq568 Length=2932 Score = 217 bits (240), Expect = 5e-54 Identities = 379/544 (70%), Gaps = 37/544 (7%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTC 112 ||||||||||||||| | |||||||||||| ||||||||| || |||||||| Sbjct 1557 GGCATTCGGAGTTTGATAACCTTCGGTAAGCTTTGACGCCCCCTAGGGTATTCAGTGCTC 1616 Query 113 TACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTAT 172 ||||||| || | | || ||| |||||| |||||| |||||||||||||| Sbjct 1617 TACCTCCATCT-GACTCTCATGAGGCTAGCCCTAAAGCTATTTCGAGGAGAACCAGCTAT 1675 Query 173 CACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTA 232 | | ||| |||||| |||| |||||| ||||| ||||| || | |||||||| | Sbjct 1676 CTCCGGGTTCGATTGGAATTTCTCCCCTACCCACACCTCATCGCCACCCTTTTCAACGGA 1735 Query 233 AGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCAC 292 ||| |||||| ||||||| | |||| |||||| |||| ||||| |||||||| Sbjct 1736 TGTGCGTTCGGACCTCCACTGCCTTTTACGGCAGCTTCATCCTGGACATGGGTAGATCAC 1795 Query 293 TTCGCTTCGGGTCT--------TGA-TCGTGCCACT------CATACGCCCTATTCGGAC 337 | ||||||||| ||| | ||||| | | |||||||| ||| Sbjct 1796 CCGGTTTCGGGTCTGCGTTAACTGACTTTTGCCAATTGCTTGGCTCTGCCCTATTAAGAC 1855 Query 338 TCGCTTTCGCTACGGCTACCCCAC----ACGGGTTAACCTCGCGACACAACGCAAACTCG 393 | | |||| || ||||| || || | ||||||| || | ||| | |||| Sbjct 1856 TTGGTTTCCCTTCGGCT-CCGGACTTTAAGTCCTTAACCTTGCCTGTCTCCGC-AGCTCG 1913 Query 394 CAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGA 453 | || | |||| ||||| | |||| | | | || | | | |||| | | Sbjct 1914 CCGGACCGTTCTACAAAAAGTACGCGG-----TTGCACTT--ATGATACTT------CCA 1960 Query 454 CGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACC 513 | | ||||| |||| |||||||||| || ||||||||||| || ||||| ||||||||| Sbjct 1961 CAGTTTGTA-ACACAGGGTTTCAGGTTCTCTTTCACTCCCCTCCCGGGGTTCTTTTCACC 2019 Query 514 TTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGG 573 ||||| |||| |||| | | ||||||||||||| || ||||||||| |||| |||||| Sbjct 2020 TTTCCTTCACAGTAC-TATACGCTATCGGTCACTGAGTAGTATTTAGCCTTACGGGGTGG 2078 Query 574 TCCC 577 |||| Sbjct 2079 TCCC 2082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817569409792