Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq568 138 3e-30 >seq568 Length=2932 Score = 138 bits (152), Expect = 3e-30 Identities = 135/170 (79%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 || |||| | ||||| || | ||||||||| ||| ||||||||||||| |||||||||| Sbjct 1955 CTTCCACAGTTTGTAA-CACAGGGTTTCAGGTTCTCTTTCACTCCCCTC-CCGGGGTTCT 2012 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| ||||||| |||| |||||| | | |||||||||| | |||||||||||||||| Sbjct 2013 TTTCACCTTTCCTTCACAGTACTA-TACGCTATCGGTCACTGAGTAGTATTTAGCCTTAC 2071 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || |||||||| | | ||| |||| ||| | |||| ||| ||||| Sbjct 2072 GGGGTGGTCCCCGCTTGTTCCCACAAGGTTCCACGTGTCTCGTGGTACTC 2121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241579103872