Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq568 239 1e-60 >seq568 Length=2932 Score = 239 bits (264), Expect = 1e-60 Identities = 302/405 (75%), Gaps = 14/405 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||| |||||||||||| ||||||| |||||||||||| | ||| ||| Sbjct 1105 CGACTACGCCTCTCGACCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATCAGCTTTACC 1164 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 |||||| ||||||||| ||||| | ||||||||||| | | |||||||||| || | Sbjct 1165 CTGGAAACCTTGGATATTCGGCCAAGAGGATTCCCACCTCTTTCTCGCTACTCATTCCGG 1224 Query 121 CATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGA 179 ||||||| || | || |||||||| | || | ||||||| | || | Sbjct 1225 CATTCTCTCTTCTCAA-AACTCCACTGTTCCTTC-CAGTTCAGCTTCTGTGTTTTGACAA 1282 Query 180 CGCTCCCCTACCCAACCACAC------AGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||| ||||| || || || | | | || |||||||| || || |||| Sbjct 1283 TGCTCCTCTACC-AATCATACTTTCTTATGATTCCTAAGCTTCGGTGGTGTGTTTCAGCC 1341 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| ||||||| | | | || ||| |||||||||||||||||||||| || | Sbjct 1342 CCGG-ACATTTTCGGCGCAGGACCTCTCGACTAGTGAGCTATTACGCACTCTTTTAATGT 1400 Query 294 -TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 |||||||||| ||||||| |||| | ||||| | || ||||||||||| ||||| | Sbjct 1401 GTGGCTGCTTCTGAGCCAACATCCTAGCTGTCTTTGAAATCCCACATCCTTTTCCACTTA 1460 Query 353 GTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 ||| ||||| ||| ||||||||| | |||||||| ||||||| Sbjct 1461 -ACACACACTTTGGGACCTTAGCTGTAGGTCTGGGCTCTTTCCCT 1504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177580180992