Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26]
1,683 sequences; 84,405,302 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq568 239 1e-60
>seq568
Length=2932
Score = 239 bits (264), Expect = 1e-60
Identities = 302/405 (75%), Gaps = 14/405 (3%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||| |||||||||||| ||||||| |||||||||||| | ||| |||
Sbjct 1105 CGACTACGCCTCTCGACCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATCAGCTTTACC 1164
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120
|||||| ||||||||| ||||| | ||||||||||| | | |||||||||| || |
Sbjct 1165 CTGGAAACCTTGGATATTCGGCCAAGAGGATTCCCACCTCTTTCTCGCTACTCATTCCGG 1224
Query 121 CATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGA 179
||||||| || | || |||||||| | || | ||||||| | || |
Sbjct 1225 CATTCTCTCTTCTCAA-AACTCCACTGTTCCTTC-CAGTTCAGCTTCTGTGTTTTGACAA 1282
Query 180 CGCTCCCCTACCCAACCACAC------AGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233
||||| ||||| || || || | | | || |||||||| || || ||||
Sbjct 1283 TGCTCCTCTACC-AATCATACTTTCTTATGATTCCTAAGCTTCGGTGGTGTGTTTCAGCC 1341
Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293
||| ||||| ||||||| | | | || ||| |||||||||||||||||||||| || |
Sbjct 1342 CCGG-ACATTTTCGGCGCAGGACCTCTCGACTAGTGAGCTATTACGCACTCTTTTAATGT 1400
Query 294 -TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352
|||||||||| ||||||| |||| | ||||| | || ||||||||||| ||||| |
Sbjct 1401 GTGGCTGCTTCTGAGCCAACATCCTAGCTGTCTTTGAAATCCCACATCCTTTTCCACTTA 1460
Query 353 GTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
||| ||||| ||| ||||||||| | |||||||| |||||||
Sbjct 1461 -ACACACACTTTGGGACCTTAGCTGTAGGTCTGGGCTCTTTCCCT 1504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177580180992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |