Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq568 86.0 4e-15 >seq568 Length=2932 Score = 86.0 bits (94), Expect = 4e-15 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCA-TTCATAGCCACCGGATCACTATGACCT 59 || |||||||||||||||||||||| | ||| ||| || |||||||||||||| | ||| Sbjct 80 TAGCTTTTATCCGTTGAGCGATGGCTGTCCCACTTCTTA-CCACCGGATCACTAAGTCCT 138 Query 60 GCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| | ||| || | || | | || || ||| || | ||| |||| ||||||| Sbjct 139 ACTTTCGTACCTGTTCCACCCGTCGGTGTCACAGTCAGGCTCCCTTCTGCCTTTGCACT 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351994446100