Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq568 82.4 7e-14 >seq568 Length=2932 Score = 82.4 bits (90), Expect = 7e-14 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||| | ||| | ||||||||||||||| | ||| |||||| ||||| Sbjct 92 GTTGAGCGATGGCTGTCCCACTTCTTACCACCGGATCACTAAGTCCTACTTTCGTACCTG 151 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTC--ACGATG 141 || | ||||| | || |||||| || ||| |||| ||||||| |||| | | | Sbjct 152 TTCCACCCGTCGGTGTCACAGTCAGGCTCCCTTCTGCCTTTGCACT--CCTCGAATGGTT 209 Query 142 TCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||| || | | || ||||| | || |||||| || Sbjct 210 TCCGTCCATTCTGAGGGAACCTTTGAGCGCCTCCGATA 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473592278396