Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq352 197 3e-48 seq233 181 2e-43 seq258 127 4e-27 seq54 82.4 1e-13 >seq352 Length=11155 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 6511 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 6454 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 6453 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 6394 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 6393 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 6334 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 6333 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 6274 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 6273 AAGTCCCTGCCCTTTGTA 6256 >seq233 Length=75887 Score = 181 bits (200), Expect = 2e-43 Identities = 205/268 (76%), Gaps = 15/268 (6%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTC------AAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||||||||||||||| | || | | |||||| || | ||| |||||||||| Sbjct 9192 GCTTCTTAGAGGGACCAGCGACACTTTCGCAAGCCGCACGA-GAAAGAG-CAATAACAGG 9135 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG- 183 |||||||||||||||||||| | |||| ||||||| ||||||||||| | | || || | Sbjct 9134 TCTGTGATGCCCTTAGATGTACGGGGCTGCACGCGTGCTACACTGACGGCGTCAGCGTGC 9075 Query 184 -TTCATCACCTTGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGA 240 |||| || |||| | |||||| ||| |||| | |||| | ||||| |||| Sbjct 9074 GTTCAAGCCC--GGCCTGTCAAGGTC-GGGAAATCGGTTGAAACGTTCTCGTGACTGGGA 9018 Query 241 TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCA 300 || | |||| ||||||| | || |||||||||| || |||||||||| ||||||||| Sbjct 9017 CAGGGAATTGAAATTATTTCCCTCGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCT 8958 Query 301 CGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| ||||||||||||||||||| Sbjct 8957 TGCGTTGACTACGTCCCTGCCCTTTGTA 8930 Score = 181 bits (200), Expect = 2e-43 Identities = 205/268 (76%), Gaps = 15/268 (6%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTC------AAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||||||||||||||| | || | | |||||| || | ||| |||||||||| Sbjct 42870 GCTTCTTAGAGGGACCAGCGACACTTTCGCAAGCCGCACGA-GAAAGAG-CAATAACAGG 42813 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG- 183 |||||||||||||||||||| | |||| ||||||| ||||||||||| | | || || | Sbjct 42812 TCTGTGATGCCCTTAGATGTACGGGGCTGCACGCGTGCTACACTGACGGCGTCAGCGTGC 42753 Query 184 -TTCATCACCTTGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGA 240 |||| || |||| | |||||| ||| |||| | |||| | ||||| |||| Sbjct 42752 GTTCAAGCCC--GGCCTGCCAAGGTC-GGGAAATCGGTTGAAACGTTCTCGTGACTGGGA 42696 Query 241 TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCA 300 || | |||| ||||||| | || |||||||||| || |||||||||| ||||||||| Sbjct 42695 CAGGGAATTGAAATTATTTCCCTCGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCT 42636 Query 301 CGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| ||||||||||||||||||| Sbjct 42635 TGCGTTGACTACGTCCCTGCCCTTTGTA 42608 Score = 168 bits (186), Expect = 1e-39 Identities = 171/219 (78%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||| ||||||||||||||||||| | |||| ||||||| ||||||||||| | Sbjct 15076 GCAATAACAGGACTGTGATGCCCTTAGATGTACGGGGCTGCACGCGTGCTACACTGACGG 15017 Query 174 AGCCAACGAG--TTCATCACCTTGGCCGG--AAGGTCTGGGTAATCTTGTTAAACTCTGT 229 | || || | |||| || |||| | |||||| | |||| | |||| | | Sbjct 15016 CGTCAGCGTGCGTTCAAGCCC--GGCCTGCCAAGGTC--GCAAATCGGTTGAAACGTTCT 14961 Query 230 CGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCG 289 |||| |||| || | |||| ||||||| | || |||||||||| || |||||||||| Sbjct 14960 CGTGACTGGGACAGGGAATTGAAATTATTTCCCTCGAACGAGGAATTCCCAGTAAGCGCG 14901 Query 290 TGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| ||||||| ||||||||||||||||||| Sbjct 14900 AGTCATCAGCTTGCGTTGACTACGTCCCTGCCCTTTGTA 14862 >seq258 Length=66481 Score = 127 bits (140), Expect = 4e-27 Identities = 163/219 (74%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||| ||| |||| ||| ||| ||||| | || | ||||||| |||||||||| | Sbjct 33702 GCAATAAGTGGTGTGTGTTGCGCTTGGATGTACAGG-CTGCACGCGTCCTACACTGACGG 33644 Query 174 AGCCAAC--GAGTTCATCACCTTGGCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGT 229 | || | | ||||| || |||| || ||||| ||| |||| | |||| | | Sbjct 33643 CGTCAGCTTGTGTTCAAGCCC--GGCCTGACAAGGTC-GGGAAATCGGTTGAAACGTTCT 33587 Query 230 CGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCG 289 |||| |||| | | |||| |||| || |||| || |||||||| || |||||||||| Sbjct 33586 CGTGTCTGGGACTGGGAATTGAAATTGTTTCTCTCCATCGAGGAATTCCCAGTAAGCGCG 33527 Query 290 TGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||||| ||||||| ||| ||||||||||||||| Sbjct 33526 AGTCGTCAGCTTGCGTTGACTACATCCCTGCCCTTTGTA 33488 >seq54 Length=432441 Score = 82.4 bits (90), Expect = 1e-13 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC 171 ||||||||||||||||||||||||||||||| | |||| ||| ||| ||||||||||| Sbjct 298493 GCAATAACAGGTCTGTGATGCCCTTAGATGTACGGGGCTGCATGCGTGCTACACTGAC 298436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947184058624