Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26]
1,683 sequences; 84,405,302 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq568 239 2e-60
>seq568
Length=2932
Score = 239 bits (264), Expect = 2e-60
Identities = 380/536 (71%), Gaps = 17/536 (3%)
Strand=Plus/Minus
Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93
|||||||||||| |||||||||||||| ||||||||||| ||| |||| | || ||||
Sbjct 1809 AGACCCGAAACCGGGTGATCTACCCATGTCCAGGATGAAGCTGCCGTAAAAGGCAGTGGA 1750
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
||||||||| ||| |||||||| || |||||| |||||||||||| |||| |
Sbjct 1749 GGTCCGAACGCACATCCGTTGAAAAGGGTGGCGATGAGGTGTGGGTAGGGGAGAAATTCC 1690
Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCA--AGTA 211
|| | ||| ||| ||||||||||||| ||||| |||||| |||||| ||
Sbjct 1689 AATCGAACCCGGAGATAGCTGGTTCTCCTCGAAATAGCTTTAGGGCTAGCCTCATGAGAG 1630
Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGG--GTCATTGCGACTTACCAAACCA 269
||| || || |||||||||||| ||||||| |||| | |||||| ||
Sbjct 1629 TCA-GAT-GGAGGTAGAGCACTGAATACCCTAGGGGGCGTCAAAG---CTTACCGAAGGT 1575
Query 270 TTGCAAACTCCGAATGCGCATCA-GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGT 328
| |||||||||||||| ||| | | | | |||||| || | | | |||| |
Sbjct 1574 TATCAAACTCCGAATGC-CATAATGATGATTCATGGGAGTCAGACTACACGAGATAAGTT 1516
Query 329 CCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGT 388
|| | | ||| |||| || ||| ||||||||| ||| || || | |||||
Sbjct 1515 GGGTAGTCAAAAGGGAAAGAGCCCAGACCTACAGCTAAGGTCCCAAAGTGTGTGTTAAGT 1456
Query 389 TAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCA 448
|| || || || |||| | ||||||||||||||||||||| |||||||||| ||
Sbjct 1455 GGAA--AAGGATGTGGGATTTCAAAGACAGCTAGGATGTTGGCTCAGAAGCAGCCACACA 1398
Query 449 TTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTAT 508
|| ||||||||||||| ||||||||||||||| ||| ||| || ||| |||| |
Sbjct 1397 TTAAAAGAGTGCGTAATAGCTCACTAGTCGAGAGGTCCTGCGCCGAAAATGTCCGGGGCT 1338
Query 509 TAAGTTGTCTACCGAAGCAGTGGGATCAT----TTATATGATCGGTAGGGGAGCAT 560
|| | |||||||| || ||||| |||||| ||||| |||||||
Sbjct 1337 GAAACACACCACCGAAGCTTAGGAATCATAAGAAAGTATGATTGGTAGAGGAGCAT 1282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689571564032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |