Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq568 239 2e-60 >seq568 Length=2932 Score = 239 bits (264), Expect = 2e-60 Identities = 380/536 (71%), Gaps = 17/536 (3%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 |||||||||||| |||||||||||||| ||||||||||| ||| |||| | || |||| Sbjct 1809 AGACCCGAAACCGGGTGATCTACCCATGTCCAGGATGAAGCTGCCGTAAAAGGCAGTGGA 1750 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||||||||| ||| |||||||| || |||||| |||||||||||| |||| | Sbjct 1749 GGTCCGAACGCACATCCGTTGAAAAGGGTGGCGATGAGGTGTGGGTAGGGGAGAAATTCC 1690 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCA--AGTA 211 || | ||| ||| ||||||||||||| ||||| |||||| |||||| || Sbjct 1689 AATCGAACCCGGAGATAGCTGGTTCTCCTCGAAATAGCTTTAGGGCTAGCCTCATGAGAG 1630 Query 212 TCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGG--GTCATTGCGACTTACCAAACCA 269 ||| || || |||||||||||| ||||||| |||| | |||||| || Sbjct 1629 TCA-GAT-GGAGGTAGAGCACTGAATACCCTAGGGGGCGTCAAAG---CTTACCGAAGGT 1575 Query 270 TTGCAAACTCCGAATGCGCATCA-GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGT 328 | |||||||||||||| ||| | | | | |||||| || | | | |||| | Sbjct 1574 TATCAAACTCCGAATGC-CATAATGATGATTCATGGGAGTCAGACTACACGAGATAAGTT 1516 Query 329 CCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGT 388 || | | ||| |||| || ||| ||||||||| ||| || || | ||||| Sbjct 1515 GGGTAGTCAAAAGGGAAAGAGCCCAGACCTACAGCTAAGGTCCCAAAGTGTGTGTTAAGT 1456 Query 389 TAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCA 448 || || || || |||| | ||||||||||||||||||||| |||||||||| || Sbjct 1455 GGAA--AAGGATGTGGGATTTCAAAGACAGCTAGGATGTTGGCTCAGAAGCAGCCACACA 1398 Query 449 TTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTAT 508 || ||||||||||||| ||||||||||||||| ||| ||| || ||| |||| | Sbjct 1397 TTAAAAGAGTGCGTAATAGCTCACTAGTCGAGAGGTCCTGCGCCGAAAATGTCCGGGGCT 1338 Query 509 TAAGTTGTCTACCGAAGCAGTGGGATCAT----TTATATGATCGGTAGGGGAGCAT 560 || | |||||||| || ||||| |||||| ||||| ||||||| Sbjct 1337 GAAACACACCACCGAAGCTTAGGAATCATAAGAAAGTATGATTGGTAGAGGAGCAT 1282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689571564032