Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq568 109 1e-21 >seq568 Length=2932 Score = 109 bits (120), Expect = 1e-21 Identities = 193/277 (70%), Gaps = 32/277 (12%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || || || ||||||||||||||| | | || ||| ||| ||||| || ||||||| Sbjct 2528 AGAGCGCAGGGTGGATGCCTTGGCACTGAGAGCCGAAGAAAGACGTGATAAGCTGCGATA 2469 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACC---- 116 |||||||| || ||||||| | || | | ||||||||||| ||||||||||||| Sbjct 2468 AGCTGCGGCAAG-GAGCAAATATCCTATAACCCGCAGATTTCTGAATGGGGAAACCTACA 2410 Query 117 ----CGGCCCTTTGGGTCATTGCATGCTGAATACATAG--GTATGCAAAGCGAACGCGGC 170 | ||| | | | || ||||| ||||| ||||| || |||| || Sbjct 2409 TGAGCAAACCTCATGTACCATACA--GTGAATTCATAGCTGTATG--GAGGGAACCTGGT 2354 Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAA-------------ATCAACCGA--GA 215 ||||||||||||||||||||| |||||||||| || ||| | || Sbjct 2353 GAACTGAAACATCTAAGTAGCCAGAGGAAAAGAAAGAAAAAGGTGATATTCACCTATCGA 2294 Query 216 TTCCCAAAGTAGTGGCGAGCGAAATGGGAT-GAGCCT 251 | || |||||| ||||||||||| ||||| |||||| Sbjct 2293 TATCCTAAGTAGCGGCGAGCGAAA-GGGATAGAGCCT 2258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918384543328